Sorghum bicolor (sorghum): 8083068
Help
Entry
8083068 CDS
T01086
Name
(RefSeq) probable rhamnogalacturonate lyase C
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
8083068
Enzymes [BR:
sbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
8083068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
Motif
Other DBs
NCBI-GeneID:
8083068
NCBI-ProteinID:
XP_021317423
LinkDB
All DBs
Position
5:complement(2172182..2176274)
Genome browser
AA seq
702 aa
AA seq
DB search
MHRSRRHTTMATAGGGGGGAVIRLLLLLLLEAIVIMLIAGVAQSSSAARGVTLRVDRRHQ
VVVVDNGVVQVTLSKPQGHITGVRYNGQRNLLQYTGGQRTSGGYWDVVWNYPGSGHPRGM
FDMLDSTEFSVVTSREDQVELSFRSTYDPSRQDSVRLNIDKRFVMLKGSSGFYCYAIFEH
NSSCPALNVSEARLAFKLNADMFNYMAISDDIQRYMPSEADRDAPRGTTLAYKEAVLLVD
PVEPQFKGEVDDKYQYSLDNKDNAVHGWISGSSHMGFWVITPSNEFKSGGPMKRELTSHV
GPTSLAMFLGTHYVGDDIVLNLADGEHWKKVLGPVFIYLNSSPSRRWWRAGGGADVVVRG
LWDDAKARARAEAGRWPYSFLESPDFAKAGDRGTVTGTLVVRDRFASKGGVQAAAAYVGL
AAPGGQPGSWATECKGYQFWTTATAATASGGFRFTIGGVRAGVYSLHAWVPGVLGDYMHT
STVTVTADGAAAVVHLGDLVFVPPRSGPTLWEIGVPDRTAAEFFVPNADDHRYANNKLFL
GNDRYRQYGLWERYAELYPRSDPVFTVGQSNHSKDWFFAHVTRKVGNGYVPTTRQIRFNL
QGRVVANGTYTLRIAVAAAQMSRLQVQVNGGGGGGVFTTPEFGGGNAIARHGIHGGVQRS
FELPVRGEQLREGENSISITQTRAFGPFLGVMYDYIRLEAPA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgatcgcgacgccatacaaccatggccactgctggcggcggcggtggtggtgca
gtaataaggttgctgctgctgctgctgctggaggccatcgtcatcatgctcatcgccggc
gtcgcacagtcgtcgtcagcggcccgtggtgttaccttacgcgttgaccgtcgccaccag
gtggtggtcgtggacaatggcgtggtgcaggtgacgctgtcgaaaccgcagggccacatc
accggcgtccgctacaacggccagcgcaacctcctccagtacaccggcggccaaagaacc
tcgggagggtactgggatgttgtctggaactaccctggctccggtcatccaagaggaatg
ttcgacatgttggacagtaccgagttcagtgttgtgacctcaagggaagaccaagtggag
ctttctttcaggagcacgtatgatccatcacgccaagatagtgttcggctaaacattgac
aagaggtttgtgatgctgaaaggcagctccgggttctactgctacgccatcttcgagcac
aatagcagctgccctgctctcaacgtctcggaggcacggctggctttcaagctcaacgca
gacatgttcaactacatggcaatctcagacgacatacagaggtacatgcccagcgaggca
gacagagacgcgccacgtggcactacgctggcctacaaggaggccgtcctgctggtggac
cccgtggagccgcagttcaagggggaggtggacgacaagtaccagtactcgctggacaac
aaggacaacgccgtccatggctggatcagcggcagcagccacatggggttctgggtgatc
acccccagcaacgagttcaagagcggcgggcccatgaagcgggagctcacctcccacgtc
ggacccacctccctcgccatgtttcttggcacgcactacgtcggcgacgacattgtgctc
aacctcgccgacggcgagcactggaagaaggtgctgggcccggtgttcatctacctcaac
tccagccccagcaggcgatggtggcgagctggcggcggtgccgacgtcgtcgtccgcggc
ctctgggacgacgccaaggcgcgggcgcgagcggaggcgggccggtggccgtacagcttc
cttgagtcgccggacttcgccaaggcaggcgacaggggcacggtcaccggcacgctcgtg
gtcagagacaggttcgcgagcaagggcggcgtgcaggccgcggcggcctacgtcgggctc
gccgcgcccggcgggcaacccgggtcctgggcgacggagtgcaagggctaccagttctgg
acgacggcgacggcggcgacggcctccggcgggttcaggttcaccatcggcggcgtccgg
gcaggggtgtacagcctccacgcatgggttccaggggtcctcggagactacatgcacacc
tcgacggtgaccgtgacggcagatggggccgccgccgtcgtccacctcggtgacctcgtg
ttcgtgcccccgaggtccggcccgacgctgtgggagatcggcgtccctgaccggactgcc
gcggagttcttcgtccccaacgccgacgaccatagatacgcaaataacaagctcttcctg
gggaacgataggtacaggcagtacggcctgtgggagaggtacgccgagctgtaccctagg
agtgatcctgtgttcacggttgggcagagcaatcactccaaggactggttctttgcgcat
gtcacaagaaaggttggcaatggctacgtgcccacgacgcggcagatacggttcaacctg
cagggccgtgtcgttgccaacggcacctacacgttgcggatcgccgtcgcagctgcccag
atgtccaggctgcaggtgcaagtgaacggcggcggcggcggcggcgtgttcacgacgccg
gagttcggcggcggcaacgcgatcgcgcggcacggcatccacggcggcgtgcagcggagc
ttcgagttgccggtgaggggcgagcagctgcgggaaggcgagaacagcatcagcatcacg
cagacgagggcgttcgggcccttcttgggggtcatgtacgactacatcaggctggaagcg
cctgcctag
DBGET
integrated database retrieval system
