Sorghum bicolor (sorghum): 8083106
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Entry
8083106 CDS
T01086
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
8083106
Enzymes [BR:
sbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
8083106
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GFIT
Motif
Pfam:
CBM-like
Rhamnogal_lyase
fn3_3
EMC7_beta-sandw
CarboxypepD_reg
RhgB_N
Motif
Other DBs
NCBI-GeneID:
8083106
NCBI-ProteinID:
XP_021316533
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Position
5:complement(53888946..53891432)
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AA seq
567 aa
AA seq
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MLRGSSGFYCYAIFEHDRAYPALNITEARLVFKLNPAKFNYMAITDDIQRYMPSAVDREE
PRAVPLAYKEAVLLVDPKEPQFRGEVDDKYQYSLDNKDNVVHGWISGSDPNPIGFWVITP
SNEFKSGGPLKRELTSHVGPTSLTMFMGTHYVGKYMVADIDDGEEWKKVLGPVFIYLNSG
PKTGDLWEDAKAQAEAEARSWPYGFLASPDFPKSAERGSVTGRLLVSDRHLNKKHDMPAG
AAAYVGLASPGQPGSWATESKGYQFWTRAASDGTFTIANVREGVYDLYAFVPGVLGDYYD
RGSPSSPLTVAPGRAVAVGDLVFEPPRSGPTVWEIGVPDRTAAEFYVPDPDPRYVNRVFV
GDRDRYRQYGLWERYAELYPDKDLVFTVGESNESKDWFFAHVTRKVGQVAVPTTWQIRFS
LDSVEADGDYTLRIAIAASERCRLQVQVNDDGDDARRGGVFTAAGDMAMGDDNAITRHGI
HGMQRSLEFAVGGHLLRRGGNTIGLKLISHQQGPEGPAMVAGVMYDYIRLEGPPSSRGVA
SRGVPLHRVWVQILLVSSLACFLVMSQ
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaggtagctctgggttctactgctatgccatctttgagcatgacagggcctac
cctgctctcaacatcaccgaagctcggcttgtcttcaagcttaacccggcaaagttcaat
tacatggctattacagacgacatacagaggtacatgcccagcgcggtggacagagaagaa
cctcgtgctgtcccactggcttacaaggaggctgttctgctggttgaccccaaggaaccc
caattcagaggagaggtagatgacaagtaccagtactctctggataacaaggacaacgtt
gttcacggatggatcagcggcagcgatccaaacccaattggtttctgggtcatcactccc
agcaacgagttcaagagcggtggccctctcaaacgggagctcacctcccatgtcggcccc
acatctctcaccatgtttatggggacgcattatgtcggcaagtacatggtggccgacatc
gacgacggcgaggagtggaagaaggtcctcggccccgtgttcatctacctcaactcaggt
cccaagacaggcgacctgtgggaggacgccaaggcgcaggcggaggccgaggcgaggagc
tggccctacggcttcctggcgtcaccggacttccccaagtcagccgagagagggtccgtc
accgggaggctgttggtcagcgacaggcacctgaacaagaagcacgacatgcccgccggg
gcggcggcctacgtcggcctggcctcgccggggcagccgggctcctgggcgacggagagc
aaggggtaccagttctggacgagggccgcgtccgacggcaccttcaccatcgccaacgtc
agggaaggcgtgtacgacctgtacgccttcgttccgggggttcttggagactactacgac
cgcggctcgccgtcgtcgccgctgaccgtagcgcctggccgtgccgtcgccgtcggtgac
cttgtcttcgagcccccgaggtccggcccgacggtgtgggagattggcgtccccgaccgt
acggcggcggagttctacgtcccggacccggaccccaggtacgtcaacagggtcttcgtc
ggcgaccgagacaggtaccggcagtacggtctctgggagaggtacgccgagttgtacccg
gacaaggatctcgtcttcaccgtcggtgaaagcaacgaatccaaggactggttctttgca
cacgtcacaagaaaggttggccaggttgccgtgccaacgacatggcagatacggttcagt
ctggacagcgtcgaggctgacggcgactacacgctgcggatcgccattgcagcttctgaa
aggtgcaggttgcaggtgcaagtgaatgacgatggggatgatgcgaggagaggcggggtg
tttacggcggccggcgacatggccatgggggacgacaacgccatcacgcgccacgggata
cacggcatgcagcggagcctcgagttcgcggtcgggggccacctgctgcggcgaggcggc
aacaccattggcctaaaactcatcagccaccagcaaggaccggaaggtccggccatggtc
gccggagtcatgtatgactacatccgcctagaagggccgccgtcgtccagaggcgttgcg
tcacgcggggttccacttcaccgtgtttgggtgcagattttgctcgtgtcttcactggcc
tgcttcctcgtgatgtcccagtag
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