Sorghum bicolor (sorghum): 8083713
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Entry
8083713 CDS
T01086
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8083713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8083713
03009 Ribosome biogenesis [BR:
sbi03009
]
8083713
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8083713
Spliceosome [BR:
sbi03041
]
Complex A
U2 snRNP components
U2 related factors
8083713
Complex B
8083713
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
8083713
Ribosome biogenesis [BR:
sbi03009
]
Eukaryotic type
90S particles
Helicases
8083713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
T2SSE
AAA_30
AAA_7
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
8083713
NCBI-ProteinID:
XP_021305823
LinkDB
All DBs
Position
1:complement(67856147..67860451)
Genome browser
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAASNGAAATAAGGNPSVNRWNGRPYTARYFEILE
KRRTLPVWQQKEEFLRSLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKY
KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINN
MGDQVGTVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIV
YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGN
LTQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSVPNCFLRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINSRALKSADNVRQQLVRIMTRFNLK
MCSTDFNSREYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWV
IYNEYVLTTRNFIRTVTDIGGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRERERASN
RG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcggaaggtgagcctcttcgacgtggtcgacgagacctccgtc
tccgccaagctgggccgcgccgcctccaacggcgccgccgccaccgcggcggggggcaac
ccgtctgtcaaccggtggaacgggcggccctacacggcacggtacttcgagatcctcgag
aagcgccgcacgctccccgtgtggcagcagaaggaggagttcctccgctctctccgcgac
aaccagaccctcatcctcgtcggtgaaacgggaagcgggaagacaactcagatcccccaa
tttgttcttgaggcggaaggcttgagtaaccgttccatggttgcttgcactcagcctcgg
agggttgcagcaatgtcagtctccaggcgtgtggcggaggagatggatgttactattggg
gaagaagtgggttacagcattcggtttgaggattgcagcagccacaaaactgttctcaaa
tatttgacagatggtatgcttttgagagaagcaatggcagacccacttttagagaagtac
aaggtgattgttcttgatgaggctcatgagaggactttggcaacagatgttctgtttggg
cttctaaaggaggttctaaaaaatagaccagatttgaagcttgttgttatgagcgctacc
cttgaagcagagaaattccagggttacttcagtggtgcacccttgatgaaggtgcctggg
agacttcatccagttgagatattttatacccaagaaccagagagggactatctagaggct
gctatcaggacagttgtgcaaatacatatgtgtgaacctgctggtgatatccttgtattc
cttactggagaagaggagattgaggatgcatgtcggaaaatcaataaggaaattaataat
atgggagatcaggttggcacagttaaagtcgtgcctttatactctacactgcctccagcc
atgcagcagaagatttttgaacctgctcctgccccattgaaggaaggaggtcctcctgga
aggaaaattgttgtctccacaaacattgctgaaacatccttaactatagatggcatagtt
tatgtgatagacccagggttttccaaacagaaagtttacaacccaagaataagggtggaa
tccctcctggtgtcaccaatttctaaggcaagtgctcatcagagagctggtcgtgctgga
cgaacgcaacctgggaagtgctttaggctatacacagagaagagtttcaatgaggatttg
caaccacagacatacccagaaattcttcggtcgaacctggcaaatacagttctgaccttg
aagaaacttggaattgatgatttagtacattttgactttatggatcctccagcgccagaa
actctaatgagggccttagaagttttgaactatttgggtgcactagatgatgaaggtaat
ctaacacagttaggtgagatgatgagtgagtttcccctggatccacaaatgtcgaagatg
cttgtcatcagtccaaagtacaactgttcgaacgagatcttatcaatatctgccatgctg
tcagtacccaattgcttcctccggcctagggaggctcaaaaggctgctgatgaggcgaag
gctcgatttggccatattgatggggaccatctgacgcttctgaatgtataccatgcatac
aagcaaaacaatgaagatccccagtggtgttacgagaactttatcaattccagagcactt
aagtctgcagacaatgtcagacaacagcttgttcgcatcatgactagattcaacctcaag
atgtgcagcacggatttcaatagccgtgagtactatgtcaatataaggaaagccatgctt
gcagggtatttcatgcaggtcgctcacctggagcgaactggacattacctgactgtaaaa
gacaaccaggttgtccatcttcatccctccaattgtatggaccataagccagagtgggtc
atctacaatgaatacgtcttgaccaccaggaatttcatccgcacagtcaccgatatcggt
ggggaatggctaattgatatcgcgccacattactatgatctgagcaatttcccgtcatgt
gaggccaagcgtgttcttgagaggctgtataacaagcgggagagggaaagagcttcaaat
agaggctga
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