KEGG   Sorghum bicolor (sorghum): 8084030
Entry
8084030           CDS       T01086                                 
Name
(RefSeq) transcription factor bHLH140
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    8084030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sbi03400]
    8084030
Enzymes [BR:sbi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     8084030
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     8084030
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     8084030
DNA repair and recombination proteins [BR:sbi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     8084030
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     8084030
SSDB
Motif
Pfam: DcpS_C AAA_33 zf-C2HE Macro HIT AAA_18 Zeta_toxin AAA ABC_tran KTI12 nSTAND3 NPHP3_N AAA_22 AAA_29 AAA_25 AAA_30 AAA_5 AAA_24 AAA_16 AAA_28
Other DBs
NCBI-GeneID: 8084030
NCBI-ProteinID: XP_021306532
LinkDB
Position
1:complement(69019534..69023493)
AA seq 788 aa
MDPDAGGSSSSPPPPSATSGAGAETKEEERGSQQVVLVLVGPPGSGKSTFAEAVVGGSTA
GRPWVRVCQDTIGNGKAGTKIQCLKAASDALKEGKSVLIDRCNLEREQRADFVKLGGTLH
TDVHAISLDLPAKVCISRAVSRKGHEGNLQGGKAALVVNRMLQKKETPLLTEGFSRIMCC
NDDGDIKKAVDLYNGLGPSDSLPSGVFGQKSKKPVQVGIMKFLKKADTSSVETSSGPKLA
LTEIKPAQQNPLPKQENVEAGFACPMEVEKGLNDKMENEEHAKEIDYCDVGSRTLAFPSI
STADFQFDLDRASDVIVDTAFKFLQKFDNIRLVLVDLSEKSRILSLVKQKAAKKSIDSNR
FFTYVGDITQLHTKGGLQCSVIANAANWRLKPGGGGVNAAIYNAAGESLQHATKKCADAL
RPGTSVVVPLPSTSPLHQREGVTHVIHVLGPNMNPMRPDYLKNDYTRGSKILCEAYNSLF
ESFASIVQSYMGKQNNESGAEKSASGGTSPNDTKMKREDSHGSERMKKHKLFQPIMTSKQ
QHECTKVNGPKCHADAMTSSAVPSQTRQVDNKRNDVVTRKTWGSWAQSLYELAMNPEKYK
NSDSILETSDEYIVLKDLYPKAKRHILVISRMDGLDSLADVKKEHLPLLRRMHSAGVKWA
QKFLEEDAALEFRLGYHSVPSMRQLHLHIVSQDFNSASLKNKKHWNSFTTSFFRDSVDVI
EEIEQNGSTTTSSDEKILAMELRCHRCRSAHPNIPKLKSHIAICKSSFPSHLLQKNRLLS
STMHMDRK
NT seq 2367 nt   +upstreamnt  +downstreamnt
atggatcccgacgccggcggctccagttcctctccaccacctccgtcggcaacctcaggc
gcgggcgcggagacgaaggaggaggagcgcggcagccagcaggtggtgctggtactggtg
ggcccaccgggcagcggcaagtccacgttcgccgaggccgtagttggcggctccaccgcc
ggccgcccctgggttcgcgtctgccaggatacaatcgggaacggcaaagctgggacaaaa
atacagtgcttgaaggctgcatcagatgctctgaaggagggcaagagtgttctcattgac
cgctgtaacttggaacgcgagcagcgtgctgattttgtgaagctgggcggcacattgcac
acagatgtgcatgctatctccctggatctacctgcaaaggtctgtatctcacgtgcagtg
agccgaaagggccatgaaggaaatctgcagggtgggaaggctgcccttgttgtgaaccgc
atgctgcagaagaaggagacacccttgctcacagaaggtttcagtcggatcatgtgctgc
aatgatgatggtgacattaaaaaagcagttgatttgtataatggtttagggccttcagat
agtcttccatcaggagtttttggtcagaagagcaaaaaacctgtacaagttggtataatg
aagtttctaaagaaagctgatacttccagtgttgagacatctagtggacctaagcttgca
ttgacagaaataaagccagcgcagcaaaatcctttgccaaaacaggaaaatgttgaagct
ggttttgcctgcccaatggaagttgagaaggggttgaatgacaagatggaaaatgaagag
catgctaaagaaattgattattgtgatgttggttcccgtactctggcatttccatctatt
tctactgctgacttccagtttgatcttgacagagcatctgatgttatagtggacacagct
tttaagttcttgcagaagtttgataatataagactagttcttgtagacctgagcgagaaa
tcaagaattttgtcattggtcaaacagaaggctgctaagaagagcatcgactccaacaga
tttttcacatatgttggagatatcactcagttgcacacaaaaggaggtcttcagtgcagc
gtgattgctaatgctgctaattggaggctaaaacctggaggtggaggggttaatgcggca
atatataatgctgctggagaatctttacaacatgcaactaaaaaatgtgctgatgcactg
agaccaggaacctctgttgttgttccacttccatcaacttctcctctgcatcaacgggaa
ggtgtgacccatgtcatacatgttctcgggccaaatatgaatccaatgcggccagactat
cttaagaatgactataccagagggtctaagattctttgtgaagcatacaattcacttttt
gagagttttgcatccattgtgcagagctacatgggaaagcagaacaatgaatctggagca
gaaaagtcagcatctggagggacatctcccaatgacacaaaaatgaagcgagaggacagc
catggatctgaaaggatgaaaaaacataagttgtttcaacccattatgacttcaaagcaa
cagcatgagtgtacaaaggttaatggtccaaaatgccatgctgatgccatgacttcatct
gctgttcctagccaaactagacaagtagacaacaaaaggaatgatgtggttaccagaaag
acttggggatcctgggcccagtctctttatgaacttgccatgaacccagaaaaatacaag
aactcagattctatcctagagacatcagatgaatatattgttctgaaagacctctatcca
aaggccaaaaggcatattttggtgatatctagaatggatggtcttgactctctagcagat
gtcaagaaagaacacttgcctttgttgaggaggatgcattcagctggggtgaagtgggca
cagaagttcctagaggaagatgcagctttggaattcagacttggataccattcggttcca
tcaatgcgacaattgcatcttcacatcgttagtcaggatttcaactctgcaagcttgaaa
aataagaaacattggaactccttcaccacatcatttttccgtgattctgttgatgtcatt
gaggagattgaacaaaatggatcaacaaccaccagcagtgatgaaaagatactcgcaatg
gaactccggtgccacaggtgcaggagcgctcatccaaacatcccaaagctgaaatcccac
attgcgatctgtaaatcttccttcccttcccatcttctgcagaaaaacaggctgttgtcc
tctacgatgcatatggaccgcaagtag

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