Sorghum bicolor (sorghum): 8084169
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Entry
8084169 CDS
T01086
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8084169
09122 Translation
03013 Nucleocytoplasmic transport
8084169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8084169
03041 Spliceosome [BR:
sbi03041
]
8084169
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
8084169
Spliceosome [BR:
sbi03041
]
Complex C
Other components
EJC/TREX
8084169
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
8084169
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
8084169
NCBI-ProteinID:
XP_021311597
LinkDB
All DBs
Position
1:complement(5502641..5522539)
Genome browser
AA seq
1762 aa
AA seq
DB search
MSPPLQAPDYKHITEECLREWKGQSAGAFRLPDPVPMARFLYELCWAIVLGDLPPQKSRV
ALESVLFVEEARREEELGSVLADIIAHLGQDITISGEYRNRLVKMTKSFVESLITAPRLL
QERCDEDFLWEVEQSKLKGQDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQV
GSDLACQNSSSVTISIIKSLIGHFDLDPNRVFDIVLECFELYQDSSIFHQLIPLFPKSHA
AQILGFKFQYYQRLDVNSPVPSGLFRTAALLIKSGFIDLDNVYSHLLPNDDEAFEHFDSF
ISRRIDEANKIGKINLAATGKDLMDDEKQEITIDMYTALEMETDIVGERAPEMEKNQKLG
LLLGFLSVHDWYHAQLLFERLAHLNPVEHIEICYGLFRMIEKTMSSAYHIVCHLYYYLPP
RNDSDQTGTSAVSVSSFDLPKEFFQMLTACGPYLHRDTQLLQKVCRVLKAYYHSSKESTR
AANVVSPESRIEEALGSCLFPSLQLIPANPAVDMEIWGVLSLLPYEARYRLYGEWEKETE
QNPIVLAARQTAKLDTRRLLKRLAKENLKPLGRMVAKLAHANPMTVLQTIVQQVEAYRDM
ITPVVDAFKYLTQLEYDILQYIVIERLAQGGRAKLKDDGLNLSDWLQCLASFWGHLCKKH
NAVELRSLLQYLVNQLKKGVGIELVVLEELIQQMANVQYTENMTEEQVDAMAGSETLRQQ
ASLFGATRNYKVLSKSTNRLRDSLLPKEEPKLALPMLLLLAQHRSKIIINADATYIKMVS
EQFDRCHGILLQYVEFLSNAVTPTAYAQLIPSLQDLVHKYHIEPEVAFLIYRPVMRLFKS
NNGGDTCWPLDDNEEGESVSSDDLILHLDSSQEPIMWSALLNTVQSILPAKAWNSLSPDL
YATFWGLTLYDLHFPKDRYDTEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDLLDK
LNSESQKHQQHIASVVQRLAREKDKWLSSSPDTMKINMEFLQRCIFPRCVFSMQDAVYCA
TFVQTLHSLGTPFFNTVNHIDVLVCKTLQPMICCCTEFEAGRLGRFFHDTLKMAYYWKSD
ESVYERECANKPGFALYFRYPNSQRVSYSTFVRVHWKWNLKITKALNQCMESKEYMEIRN
ALIVLTKISSVFPVIRKSGINLEKRVTKLKGDEREDLKVLATGVAAALAARKSSWLSEEE
FGMGHIDLKPAKARSVLGNQSADPLMAKDQNARAKSVENRHERSEGAMKPDIQQKKSSVP
ANGSDSQIPSSSVQGKSSVVVHAVDEPPKPVSDEGVKVSAKPTKESETRAAQKRAGNAGK
VMKHDVAKEDAKAGRSTSWNVNQQVSTVDREALSHSADAAQETSTTITNGNLHSSSSQRN
AVTHNGAANPSGESTDLIDSTVRQQKRPPIEEQDRSGKRRKGANEPDLSEHHVDKEKSLD
SRGGDKFRSVDYEKIANEEQNLSRAGKMKEKSDDKYDRDPREKLDRGERRRGEDAIERST
VRLSERRERSIERMQERVTDKAIEKGREDRNKDERNKVRYAEPSVDRTHSSDERFRGQSL
PPPPPLPASFVPQSVGANRREEDADRRGGSSRHVQRPSPRRDEREKRQSEENTSSFQDDG
KHRREEDIRDRKREDRDTLSNKVDDRDREKGTSLKEDSDPSNVSKRRKIKRDQTSLEAGE
YAPSAPQPPSHGSGSSQLSDIRERERKGVISQHRNLHADDFPRTHGKDTTSKSSRRDSDQ
MHEREWEEEKRPRTETKRKHRK
NT seq
5289 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccctctgcaggcgcccgactacaagcacatcacggaggagtgccttcgcgaa
tggaagggccagtccgccggcgccttccgccttcctgatccggtccccatggcgcgcttc
ctctacgagctctgctgggcgatcgtgctgggcgacttgccgccgcagaagagccgggtg
gcgctggagtcggtgttgttcgtggaggaggcacggagggaggaggagctcggctccgtg
ctcgctgatatcatcgctcacctagggcaggatattacaatctcgggggaatatcgcaac
cgtcttgttaaaatgactaagtcatttgtggaatccttgattactgcgcctaggcttctg
caagagcgatgtgatgaagatttcctttgggaggttgaacaaagtaagctgaaaggccag
gatttaaaatctaaggaggttagggtcaacacacgtcttctttaccagcaaactaaattc
aacctcttacgggaggaaagtgagggctatgccaaattggtgacactcctttgtcaagtt
ggttcagatctagcttgccagaattcttcttcggttacgatcagcattataaagtcattg
attggccattttgatctggacccaaatcgtgtatttgatattgtgttggaatgctttgaa
ctctatcaagatagtagcatctttcatcagctcatacctctttttccaaagtcccatgct
gctcaaattttggggttcaaattccagtattatcaacgattggatgtcaacagccctgtt
ccatctggccttttcagaacagcagctttattgatcaaatctggattcattgaccttgat
aatgtctattctcacttgcttccaaatgacgacgaggcgtttgagcattttgattctttc
atttcaagaagaatcgatgaggctaataaaattggcaaaatcaaccttgctgctactggg
aaggaccttatggatgatgagaaacaagaaattactatcgatatgtatacagcattggag
atggaaactgatatagttggggagcgagcccccgagatggagaagaaccagaaacttggg
ctgcttcttggttttctctctgtgcatgactggtatcatgcacaactactctttgagcgc
cttgcgcacctaaatcctgttgagcacattgaaatctgttatggattatttagaatgatt
gaaaagacaatgtcttcagcctatcatatagtttgtcacctgtactattacttgcctcct
agaaatgattctgaccagacaggcacatctgctgtgtctgtaagttcatttgatctgcca
aaggagtttttccaaatgctcaccgcttgtggaccatatcttcatcgtgatactcaatta
cttcaaaaggtttgcagagtattaaaagcgtactaccactcatcaaaagagtcaacccgt
gcagcaaatgtagtttcaccagaatctcgaattgaggaagcacttgggtcgtgcttgttt
ccttcgttgcagcttatccctgctaatcctgctgttgatatggagatatggggggttctt
tcccttcttccatatgaggcccgctatcgtctatatggtgaatgggagaaggagaccgaa
cagaacccaattgtccttgctgcaaggcaaactgcaaagctggacaccagaaggcttcta
aaacggttggctaaggaaaacctgaagccacttggacgcatggtggctaaacttgcccat
gcgaatcctatgaccgtgcttcagacaattgtccaacaggttgaagcatacagggatatg
attacaccagttgtggatgcttttaagtacttgactcagctggagtatgacatcttgcaa
tatattgtcattgaacgcttggcacaaggtggtcgtgcgaaacttaaagatgatggactt
aatctctcagattggcttcagtgtcttgcatccttttgggggcacctgtgcaagaagcat
aatgctgtggaactgagaagccttttgcagtatcttgttaatcaattgaagaagggcgtg
ggcattgaacttgttgtcctagaggagctcattcagcaaatggcgaatgtgcagtatact
gagaacatgacagaggaacaggtcgatgctatggcaggaagtgagactttgcggcagcaa
gcttcactgtttggagcaacaagaaactataaggtgttgagtaagtccacaaataggcta
agggattcattgcttccaaaagaagagcccaaacttgcacttcctatgttactgctgctt
gctcagcatcggtccaagatcataataaatgctgatgccacatatatcaaaatggtcagt
gagcagtttgatagatgccatggaatacttcttcagtatgttgagtttctttcaaacgcc
gtaactccaactgcctatgctcaactaataccttctttgcaagatctggtccataaatac
cacattgagccagaggttgctttccttatatatcgcccagtgatgcggctttttaagagc
aataatggaggtgacacttgttggcctcttgatgataacgaggaaggagaatctgtatca
tctgatgatcttatcttacatcttgattcgtctcaggaaccaatcatgtggtcagctctt
cttaacacagtccagtcaattttgccagcaaaagcttggaacagtctttcaccagattta
tatgctactttctggggcttaacactctatgatcttcactttccaaaagaccgttatgat
acagaaatcaagaagctgcatgagaatctcaaacaattggaggacaactcagataattct
agcattgcaatttcaagacgtaagaaggacaaggagagaatccaagatttactcgacaaa
ctgaacagtgaatctcagaagcaccagcagcacattgcatctgtagtccaaaggttagcc
cgtgaaaaggataagtggttgagctccagtccagatacaatgaaaatcaacatggagttc
ttacagcgctgcatattcccacgatgtgtttttagtatgcaagatgcagtgtattgtgct
acatttgtccaaacactacactcccttgggactcctttctttaacacagtcaatcatatc
gatgttctcgtctgtaaaaccctacagccaatgatatgctgttgcacggaatttgaagct
ggcaggcttggaagattttttcatgatacgttgaagatggcctactattggaagagtgat
gaatctgtttatgagcgtgaatgtgcaaacaaaccaggctttgcattgtacttcagatac
ccaaacagccagcgtgtatcctatagtacatttgttcgggttcattggaagtggaattta
aaaatcaccaaagctcttaaccaatgcatggaatcaaaagaatacatggaaattcgaaat
gctcttattgtgcttacaaagatttctagtgtctttccggtgattcgtaaaagtggtatc
aatcttgagaaacgggtgactaaactaaaaggggatgagagagaagatcttaaagtacta
gccactggtgtagctgctgctttagctgctcgcaagagttcttggctatctgaagaagag
tttggcatgggccacattgatctgaagccagcaaaagcaagatctgtgcttggaaaccag
tcagcagatcccttgatggcaaaagatcaaaatgcccgtgcaaagtctgtagagaatagg
catgaaaggtcagagggtgctatgaagcctgatattcagcaaaagaagagctctgtgcct
gcaaatggatctgatagtcaaataccatcttcctccgtacaagggaaatcttcagtggtt
gtacatgcagtggatgaacctccgaaacctgtgtctgatgagggggttaaagtttctgca
aaacctactaaagaatctgagacaagagcagcacaaaagcgtgctggcaatgctgggaag
gtaatgaagcatgatgttgcaaaggaagatgcaaaagctgggagatctaccagctggaat
gtaaatcaacaagtctctactgttgatagagaagcattgtctcattcagctgatgctgcc
caagaaaccagtaccactattaccaatggtaacttgcattcgtcatcttctcaaagaaat
gcagttacacataatggagcagctaatccctctggtgagtctactgatctgattgactct
actgtgagacagcaaaaaagacctccgattgaggagcaagatagatcaggtaaacggagg
aaaggtgcaaatgaacctgatttgagtgaacatcatgtagacaaggaaaagagtttggac
tcacgtggcggagataagtttcgttcagtggattatgagaagattgctaatgaggaacaa
aacttaagtagggcaggcaaaatgaaagagaaatctgatgataaatacgacagagatcct
agggaaaaattagatcgaggtgaaaggcgtcgtggggaagatgccattgagagatcaaca
gttagattgtcagagaggagagaacgttctattgaaaggatgcaagagagagttacagat
aaagccattgaaaaaggtagggaggacagaaataaggatgagaggaataaagttagatat
gctgaaccttcggtggaccggacacattcttctgatgaacgattccgagggcaaagtttg
ccaccgcccccacctcttcccgcaagttttgtaccccaatcagttggtgctaaccgacgt
gaagaagatgctgaccgaaggggtgggagctccaggcatgttcaaaggccatctcccagg
cgtgatgagagagaaaagaggcagtcagaggagaatacttcgtcatttcaggatgatggg
aagcacagaagagaggaagatattcgtgatagaaagcgtgaggatagggatactttatca
aacaaggtagatgacagggatagggaaaaggggacttctttgaaagaggacagtgaccct
agtaatgtttctaaacggagaaagatcaagcgagaccagacttctttagaagctggggaa
tatgcaccttctgctccacagcctccctcccatggatctggcagctcacaattgtctgac
atacgagaaagagaaaggaaaggggtaatttcacagcatcgtaacttacacgctgatgac
tttcctaggacgcatggcaaggacacgacaagcaagtcaagtcgtcgagattctgaccaa
atgcacgagagggaatgggaagaggaaaagcgaccaagaactgaaacaaaaaggaagcat
cggaaatag
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integrated database retrieval system
