Sorghum bicolor (sorghum): 8084642
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Entry
8084642 CDS
T01086
Name
(RefSeq) probable serine/threonine-protein kinase vps15 isoform X1
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
8084642
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sbi01001
]
8084642
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbi04131
]
8084642
Enzymes [BR:
sbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
8084642
Protein kinases [BR:
sbi01001
]
Serine/threonine kinases: Other
VPS15 family
8084642
Membrane trafficking [BR:
sbi04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
8084642
Autophagy
Autophagosome formation proteins
PI3K complex
8084642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS15-like_hel
WD40
Pkinase
WD40_Prp19
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_C
HEAT
Beta-prop_TEP1_2nd
WDR90_beta-prop_4th
PK_Tyr_Ser-Thr
Beta-prop_EML_2
PEP5_VPS11_N
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Kinase-like
Beta-prop_CAF1B_HIR1
NBCH_WD40
Cohesin_HEAT
Tti2
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
APH
TCAD9
Beta-prop_RSE1_2nd
DUF7691
Motif
Other DBs
NCBI-GeneID:
8084642
NCBI-ProteinID:
XP_002454710
UniProt:
C5XUH3
LinkDB
All DBs
Position
4:complement(66439580..66448359)
Genome browser
AA seq
1480 aa
AA seq
DB search
MGNKIARTTQASATEYYLHDLPSTYNLVLLDVVSRGRFLKSVRCKHDEGLLLVKVYFKRA
GEPIDLKEHERRLERIRNAFKGIEGSHVLPFQVWLQTDKAAYLLRQYFFNNLHDRLSTRP
FLSQIAKKWLAFQLIHAVEQSHSKGICHGDIKCENVLVTSWNWLYLADFASFKPTFIPDD
DPSDFSFYFDTGGRRRCYLAPERFYEHGGESQVTADAPLQPSMDIFSLGCVLAELFLEGQ
PLFELSQLLAYRRGQYDPIHTLEKIQDTGIRDMILHMIQLDPKKRLPCRSYLQKYESVVF
PFYFSKFLHKFFSDIVPLDSDARVEKTQENFEKIHEIMMGSSTTEQIERSTSCEHSEPSG
RKVMGGEILNSPGDSRNSTSIVKKITPVDHQHIVGDINFLLKEVESRSNNTSTKVTKDIE
HFVAPSISCASGNQSSQLVNPAGRKIGTGLMGRNNVVSHVKKISKSHLPSLVAAYDDQSD
TYSFDIFQQMDSKVSCEGMVLLASLLCSCIRSVKKPELRRASLILLKFSSTYIDDDSRLQ
LVVPYVIAMLSDPSAIVRCAALETLCDVLCLVQDFPISDAVIFPEYILPMLSLLPDDTEE
SVRVCYASNIHKLALTAYRFLLRSRSIADIRPLDESVVVPRSQSADLPVKKQDTFFRQLA
ELRKSIYEIVQDLVMGQKQTPNTRRALLQDIGYLCYFFGYRQSNDFLLPILPAFLNDHDE
QLRAVFFGQIVYVCYFIGARSVEEYLLPYLEQALSDGMEAVLVNALDCLTMMCRSGYLRK
RVIVGLLVKVLPLLRYPINWVKQSAVRFVAACSESLGSVDTYVYLSPHLWQFLHREPPSL
ASETALLSCLKSPLPKSIFYQALEDAQDIGDILLKSSGNKEQIIHGGRYRGTAQSGSSAN
LEDIGRLKGPNISSNMSLDVKESVSFDKSLYSGFALQASAANSSFYDGLSKGIPSYSFCA
DKRGLGETHMLPDSSVYKASIRLPWLEPNRPGVQTRDDHFSSKRRELSISDSMKSSSSLQ
GDSIPNSDTGGLPFSRSAVNLETGWKPRGILVAHLQEHRSSVNDIAVSNDNTFFVTASDD
SSIKIWDTRKLEKDIAFRSRLTYSMGNSRALCTTMVHGTSQVIVGASDGTLHLFSVDCAR
SVGSVVERYAGIVDVKRNDIKEGAILSVVNCSSDSFSPTVLFSTEHCGIHKWDTRTNSES
WSFKSSPEEGYISALVVGQCGNWFISGSSRGVLTLWDNRFLLPVNSWNYSTVSPIEKLCL
LIPPPSSISSAGRPLVFVAAGCNEVSLWNAENGSCHQMFRTASTDNEAVMSKAPSRPVNK
PIIKDTRRAGNYKYRIDQLNDPPVRRPGIRSLLPLPGGDLLTGGTDLKIRYWDQARPEQS
FCIAGPSAKEVRSAKGDILEKAVGNDESYDIRSSFGVQVVQEMYKQSTTVSGLTPKTQLA
VAAADSAGCHRDAILALASFNLSSQRLISASRDGAVKVWK
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggggaataagatcgcgcggacgacgcaggcgtcggcgacggagtactacctccacgac
ctgccgtccacctacaacctcgtgctcctcgacgtcgtcagccgcggccgcttcctcaag
tccgtccgctgcaagcacgacgaggggctgctcctcgtcaaggtctacttcaagcgcgcc
ggcgagcccatcgacctcaaggagcacgagcggaggctggaacggattagaaacgcgttc
aaggggatcgaggggtcccacgtattgcccttccaggtttggttgcaaacagataaggca
gcgtatctcctgagacagtacttcttcaacaacttgcatgatcgactgagtacacgccct
ttcctcagtcagattgcaaagaaatggcttgcctttcagttaattcatgcagtggagcag
agccatagtaagggaatttgccatggtgacataaaatgtgagaatgtgctcgttacttct
tggaattggttatatcttgcggactttgcatcattcaagccaacgtttatcccggatgat
gatccatccgatttctcattctactttgacactggaggaagacgaagatgctatctagca
cctgaaagattttacgaacacggcggtgagtcccaagttacagcagatgcacctttgcaa
ccatctatggatatattttctcttgggtgtgttcttgctgaacttttccttgaaggccag
ccactttttgagctttcacaacttctggcttatcggcgtggtcagtatgaccccatacat
accctagaaaagatacaagatactggtatccgtgacatgatacttcacatgatccagttg
gaccccaaaaaaaggctaccatgtcgaagctatctgcagaaatatgaatctgttgttttc
ccattttatttttcaaaatttctgcacaagttcttctcggacattgttccacttgactcc
gatgccagggttgaaaagactcaagaaaattttgagaagatacatgaaataatgatgggc
agctcaacaactgaacaaattgaaagatctacatcatgtgagcatagtgaaccatctggg
agaaaagtcatgggaggggaaattttaaactcacctggagattctaggaacagcacatcc
atagttaagaaaataactcctgtagaccatcaacatattgttggagatatcaattttctc
ctcaaagaagtggagagcaggagtaacaacacaagcacaaaggtcacaaaagacatcgaa
cattttgttgcaccaagcatttcctgtgcaagtggtaatcagtcctcgcagctagttaat
ccagcaggaaggaaaattggaactggtttgatgggtcggaacaatgttgtatctcatgtg
aagaagatctcaaagagtcatttaccctccttggtggctgcttatgatgaccagtcagat
acctatagttttgacatttttcagcagatggactccaaggtgagctgtgaaggcatggtc
ttgcttgcctcattactctgctcatgcatacgcagtgtgaaaaaacctgagctaagaaga
gccagtctcattcttctgaagttctcgtccacatacatagatgatgatagtcgtttacag
ctagtggttccctatgtgattgcgatgctttcagatccttctgccattgtccggtgtgct
gctttggaaaccttatgtgatgttctgtgtcttgtgcaagatttccctatcagtgatgct
gttatattccctgagtacatactcccaatgctctctttgctccctgatgatacagaagag
agtgttagggtttgctatgctagcaacattcataagctggctttaacagcctataggttc
ctacttcgttctcgtagcatagcggatattcgacctctggatgaatcagtggtagttccc
agatcacagtctgcagatttaccagtgaagaagcaagatactttttttcgccagcttgca
gagctgaggaaatctatttatgagatagtgcaagatttggtgatgggacaaaagcagaca
cctaatacccgtagagctcttctgcaggatataggttatttgtgttacttctttggttac
agacaaagtaatgattttcttcttcctatacttccagcatttctaaatgatcatgatgag
cagctccgtgcagttttctttggccagattgtctatgtttgctattttattggagcaagg
agtgttgaggaatatcttttgccatatcttgaacaggcactaagtgatggtatggaggct
gtccttgtaaatgcacttgattgcttgaccatgatgtgcaggagtggttatttgagaaaa
agagtaattgttggtctattggtaaaggttctccccctgctccggtatccaatcaattgg
gttaagcagtctgcagtaagatttgttgctgcctgcagcgagagcttaggatctgtagat
acttatgtgtacctttctcctcatctatggcagttcctacacagggagccaccttcattg
gcctctgaaactgctcttctttcatgtcttaagtctccactaccaaaatcaatcttctac
caagctttagaggatgctcaggacattggagacattttactgaagagcagtggcaacaaa
gaacagataatacatggtggaagataccgtggtacagcacaaagtggatcctcagccaac
cttgaagatattgggcgactgaaaggccctaatatttccagcaacatgtctttggatgtc
aaagaatctgtttcttttgacaaatcgctatattctggttttgctctacaagcatctgct
gcaaatagctccttttatgatggattatctaaaggaataccatcatattctttttgtgct
gataagcggggtttaggagaaacacacatgctccctgattcatcagtgtataaagcttca
atacggctaccttggttggaacccaaccgtcctggcgtgcagactagagatgatcatttc
agtagcaagcggcgagagttgagcatcagtgactctatgaagagcagttcctctttgcaa
ggggatagcattccaaactctgacactggaggattgccattctccagatcagcagtgaac
ctggagactggatggaagcctcgtggaattctagtggcacatctccaggagcatcgctcg
tctgtcaatgacattgccgtgtcaaatgacaataccttttttgtgactgcttcagatgac
tcaagtatcaaaatatgggatacaagaaagttggaaaaggacattgccttcagatctagg
ttaacatacagcatgggtaatagccgagctctatgcacgacaatggttcatggtacttca
caggttattgttggtgctagcgatggaacattacacttgttttctgtggattgtgcacgt
agtgttgggagtgttgtggaaaggtatgctggaattgttgatgtaaaaaggaatgatatt
aaagaaggcgcgattctcagtgttgtaaattgttcatcagacagctttagcccaactgtt
cttttcagcactgaacattgtggcatccataaatgggatacaagaaccaactcagaatct
tggtcatttaaatcctctccggaggagggctatatatcagcacttgttgtgggccagtgc
ggaaattggttcatctcaggttcttcaagaggcgtccttacattgtgggacaataggttt
ttactgcctgttaactcatggaactattcaacagtaagccctatagagaaattatgcttg
cttatacctccaccaagttcaatatcttctgctggaaggccattagtttttgttgccgcc
ggatgcaacgaagtttctctgtggaatgctgagaatggaagttgccaccagatgtttaga
acagcgagcactgacaatgaagctgtgatgtcaaaggcaccatcaaggcctgttaacaag
ccaatcatcaaagatacaagaagagcaggcaattataagtacagaatcgatcaattgaat
gacccacctgtacgccgtccaggcatacgttctttgctgcccttaccaggtggtgatcta
ttaactggaggaacagatttgaagattcgttactgggatcaagcaaggcctgagcaaagc
ttctgtattgctggtccctcggcgaaagaagtccgatcagcaaaaggagatattttggag
aaagcagttggaaacgatgagagttacgatataagatccagttttggagtacaagtcgtg
caggaaatgtacaaacagagtaccacggtctctggtttgacgcccaagactcagctcgca
gtggcagccgcagattctgccgggtgccatcgtgatgcaatactcgcgctggcatccttc
aacttgtctagccagagattgatatcagccagcagagacggtgctgtcaaagtgtggaaa
tag
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integrated database retrieval system
