Sorghum bicolor (sorghum): 8084851
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Entry
8084851 CDS
T01086
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Module
sbi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8084851
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
8084851
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
8084851
NCBI-ProteinID:
XP_002458187
UniProt:
C5XEB7
A0A921RFX2
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Position
3:complement(56243015..56244850)
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AA seq
404 aa
AA seq
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MARSNAYSLVLLLLYCYVSSGAAEAAAYNVAGFGAKPGGRTDSSGAFASAWSAACRSQEP
ATVYVPNGHFLLSRAAFTGPCSSSRVTLQVDGTLVAPSGYTSRGGSSGGDDDGWIVFDHV
DGLTVSGGTVDGRGEALWACKAAGHSGCPSGATSLKVLNSRDVVISGLTSVDSELYHVVI
NGCEGVTVQDVQIVAPGSSPNTDGIHVQGSSQVTVTRTGIQTGDDCVSVGPGTSNLRVEH
VSCGPGHGISIGSLGKESEESGVENVTVTGAAFVGTENGLRIKTWARAKVEGAYVRGVAF
EHALMHDVRNPIIIDQSYCPNHGRGAGCPHQSSAVKISDVRYTDIQGTSASKVAVKFDCS
ASNPCSGIGLKDIKLTLDGGKPAEATCQHADGRASGEVEPPSCL
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggctcgctccaacgcttactccctagtgctgctgctgctctattgctacgtttcgtca
ggtgcagctgaagcggcggcgtacaatgtcgccggtttcggagcgaagcctggcggccgg
acggactcgtccggcgcgttcgccagtgcctggtccgccgcttgccgatcacaggagccg
gccaccgtgtacgtgccgaacgggcacttcctgctcagccgtgcggccttcaccggccca
tgctccagcagcagggtgacgcttcaggtcgatggtacgcttgttgcgccatcaggctac
accagccgtggcggcagctctggcggggacgacgacggctggatcgtgttcgaccacgtc
gacggcctcaccgtgtcgggcggcaccgtcgacggccgcggcgaggcgctgtgggcgtgc
aaggcagccgggcacagcggctgccccagcggagcgacatcgctgaaggtgctgaactcg
agggacgtggtgatcagcggcctgacctcggtcgacagcgagctgtaccacgtcgtgatc
aacggctgcgagggcgtcacggtgcaggacgtacagatcgtcgcgccgggaagcagcccc
aacacggacgggatccacgtgcagggctcgtcccaggtcacggtcacccggaccggcatc
cagaccggggacgactgcgtctcggtcggccccggcaccagcaacctgcgcgtcgagcac
gtcagctgcggcccgggccatggcataagcatagggagcctggggaaggagagcgaggag
agtggcgtggagaacgtgacggtgacgggggccgccttcgtcggcaccgagaacgggctg
cggatcaagacgtgggcgcgggccaaggtggagggcgcgtacgtgcgcggcgtcgccttc
gagcacgcgctcatgcacgacgtgcgcaaccccatcatcatcgaccagagctactgcccc
aaccacggccgcggcgcgggctgcccccatcagagctcggccgtgaagatcagcgacgtg
aggtacacggacatccaggggacgtcggcgtccaaggtggcggtgaagttcgactgcagc
gcgagcaacccgtgcagcgggatcggcctcaaggacatcaagctcaccttggacggcgga
aagccggcagaggcgacctgccagcacgcggacggcagggcttccggcgaagtcgagcct
ccaagttgcctgtag
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