Sorghum bicolor (sorghum): 8084981
Help
Entry
8084981 CDS
T01086
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
8084981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8084981
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
8084981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
DEAD
Motif
Other DBs
NCBI-GeneID:
8084981
NCBI-ProteinID:
XP_021308941
LinkDB
All DBs
Position
2:77478962..77484597
Genome browser
AA seq
1230 aa
AA seq
DB search
MVKGSTGHHNNPIGSVPFEAFHNGSWHGVNSIRIRDGALLVKFVSSGSTVQHDIDGSYLR
IRSRKATCSDCSHVLKPGADVCVWQATYGGETKDSVPLCRDARLIKIKRNHQLDRCLCLF
AVIFYKDQCPGSKEKVISGTIADVVTIDDVCILQNLQSEELQDGSVQWNSAVDCFHHNRS
KLLSARFSLEVAYLIVLSSLRGMEFSIKLVDGNIIYQIIKGDQARYSIDSMSIPPGFGKS
MDIISFKPRAEALRPIIRTVLITQVKEDNLIEDGCTAVKHESDSAQDVEVLYEHVDIRRS
KRMKTQPDRFTSYDAPNFNRTYNKKEAYGPSNKNENSESDLSFYSSEQTESSDEEVLGNP
GVKKKVSRSFVVKEDPRSMKGQHKYPVKRNQCSLPIKENQTSMETKKNATDQGCSDSHIP
HTPAKNIEKCNRPTFRLKSFASSRSLDGNSEPAFCQKRGRKRKKGMCQREYKRMIEQCIG
NIQCEVERDSDFKIDAQILNGCGHAYQEEDFMWPSSADSQEEKDELQELWKEMDYALATV
AIDEQKQTTDSEADHESNTDLGKRGEHCHHDCMLDEQLGLTCRLCNVVCTEAKDIFPPMF
TGKDHKRLEQSHFGQDDHVLDLSFFEICAPESSKSKESGNVWSSIPVLEPKLLAHQRKAF
EFIWKNLAGSLQLEEMDDSTSRGGCVVAHTPGAGKTLLLISFLVSYLKVHPRSRPLVLTP
KAAIHTWRREFQKWGILLPLHVLHHSNRTSKLMRGLSSKLQVVLKNFHQPTWKTMRIMDC
LDKLCKWHEEPSILLMTYSSFLSLTKEDSKLHHQEFITKVLMNNPGLLILDEGHNPRSNK
SKLRKLLMKVKTEFRILLSGTVFQNNFEEYFNTLSLARPRFVNDVMTTLVPESEKKTRSR
TGKHQEALARRIFVERVGQKIESSSKHDRMDGISLLNDLTHGFIDSFEGTKLNILPGIHV
YTLFMKPTDVQEEVLAKLSMPLADNARYLLEIELLITIASIHPWLINTTRCASTYFTPAE
VARVGKYKRNFAVGCKAKFVIDLLHKSSFRGERVLIFCHNVAPITFLVKLIEIVFGWRLG
QEVLVLQGDQELPVRSDVMDKFNSDREGKRKVLIASTTACAEGISLTGASRLVMLDSEWN
HSKTRQAIARAFRPGQERMVFVYLLVASGTWEEDKYNSNRRKAWIAKMVFFGRYFDDPMQ
NRVTEIDDEVLKELADEDETNTFHMIVKQD
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagggatccacaggccaccacaacaaccccatcggttcagttccgttcgaagcg
tttcataacggatcatggcatggagtgaattctataaggatacgggatggtgctttgctt
gtaaaatttgtctcctctggatccacagttcagcatgacattgatgggtcctatctgcgc
atacgttctagaaaggcaacttgctctgattgctcacatgttctcaagccgggcgctgat
gtctgcgtatggcaagccacttacggaggagaaacaaaagattcggtaccgttgtgtcgt
gatgcaaggctcatcaaaatcaagagaaatcatcaattggatcggtgcctctgcttgttt
gccgttattttctataaagaccagtgcccgggcagcaaagaaaaagtgatatctggtaca
atagctgacgtagtgacgatagacgatgtttgcatcttgcaaaatctccaatctgaggag
ctccaggatggaagcgtgcaatggaattctgcagtggactgcttccatcataatagaagt
aagctgctgagtgctagattctccctagaagtcgcatacctgatagttttgtctagcctg
aggggaatggaattcagcatcaagctggttgatggcaatatcatttatcagatcatcaaa
ggagaccaagcacggtatagtattgattccatgagcatacctccaggttttgggaagagc
atggacataatatcattcaaaccacgtgctgaggctttacgcccaattatcagaacagtt
ctaatcactcaggttaaagaagacaatctcatagaagatgggtgtaccgcagtgaagcac
gaatctgatagtgcacaagatgttgaagtcttgtatgagcatgtggacataagacgctca
aagcgtatgaaaactcaaccagaccgctttactagttatgatgcacctaatttcaatcgg
acctacaacaagaaagaagcatatggaccatctaataagaatgaaaattcagagagcgac
ttgagtttttattcatcagagcagacagaatcaagtgatgaagaggtcttaggaaatcct
ggggtgaagaaaaaagtttccaggtctttcgtggtcaaggaagacccaaggtctatgaaa
ggccaacacaaatacccagtgaaaagaaatcagtgctctttgcctataaaagaaaaccaa
acctccatggaaacaaagaagaacgcaacagaccaagggtgttcagattctcatattcca
catacgcctgcaaagaatatagagaagtgcaatcgtccaacatttcgactaaagtcattt
gcttcctctcgaagcctagatggcaatagtgaaccagcattctgccaaaagaggggtagg
aaaagaaagaaaggcatgtgccaaagagagtacaagcgaatgatagaacaatgcattgga
aatatccagtgtgaagtggagagagattctgactttaagattgatgcccagatattgaat
ggctgtggacatgcttaccaagaagaggattttatgtggccatcttccgctgatagtcaa
gaggagaaggatgagcttcaagaattgtggaaagaaatggactatgcactggccacagta
gcaattgatgagcaaaagcagacaacagattcagaagccgatcatgagagcaatactgat
ttaggaaaaagaggagaacactgtcatcatgactgcatgctggacgaacagcttggtctg
acctgcagactgtgcaatgttgtatgcactgaggcaaaggatatctttccaccgatgttt
actggtaaggaccacaagaggcttgaacagagccattttggtcaggatgatcatgtactt
gatctttctttttttgagatttgtgctccagaatcctccaaaagtaaggaatctgggaat
gtgtggtcttcaatccctgttctggaaccaaagctacttgctcatcaaagaaaagccttc
gaatttatatggaaaaacttggcaggatcattacagcttgaagaaatggatgattcaacg
agtagaggtggttgtgtggttgcacatactccaggagcgggtaaaactctgttgctgatt
tcatttcttgtcagttacttgaaagttcacccaagaagccgaccattggtccttactcca
aaagccgcaatccatacatggaggagagagtttcagaaatggggcattttgcttccgtta
catgtgcttcaccactctaacaggacaagcaaactgatgaggggtcttagttcgaaactg
caggtggttttaaagaattttcaccaaccaacatggaaaacaatgcgcatcatggattgt
ctagacaaattatgcaagtggcatgaggaaccaagcattcttctcatgacatattcttct
ttcttatcgcttacgaaagaagactcaaagttgcatcatcaggagttcataacgaaagtt
ttgatgaacaaccctgggctattgattcttgatgaagggcacaacccaagaagcaacaaa
tcaaagttgagaaagttgctgatgaaggtgaagactgaattcagaatactcttgtctggt
acagtctttcagaacaactttgaagagtatttcaacaccttatctttggccagacctcgt
tttgtcaacgatgttatgaccacgctagttccagaatcagaaaagaaaacacggagcaga
actggcaaacatcaagaagcactggcaaggcgtatttttgtggaaagagtggggcagaag
atcgagtctagcagcaaacatgacagaatggatggcatctccttgttaaatgatcttact
catggattcatcgattcatttgaagggacaaaactgaacattcttccaggtatacatgtg
tatacccttttcatgaaacccactgacgtccaggaagaggtcctggcgaaactgtcaatg
cccttggcagacaatgcgcgttaccttctcgagattgagttgctcatcacaattgcttct
atccatccttggcttataaacacaaccaggtgtgctagcacttacttcacaccagcagaa
gtagctagagttgggaagtacaagcggaactttgctgttggttgcaaggcaaagtttgtg
attgatcttttgcacaagtcctcattcagaggggagagggtcctgatattttgccacaac
gtggccccaataacctttcttgtcaagctgatagagatagtctttggatggcgtcttggg
caggaagtcctggtgctgcaaggagatcaagaactgcctgtgcggtcagatgtcatggat
aaattcaacagtgacagagaagggaagaggaaggtgctgattgcttcaacaacagcctgt
gccgagggtatcagtttgaccggtgcatcgagattggtgatgctggattcggagtggaac
cattcgaagaccaggcaggcaatcgcaagggcattccgacctggccaggagagaatggtg
tttgtctaccttcttgtggcgtctgggacatgggaggaagataaatacaacagtaacagg
aggaaagcttggatcgcgaaaatggtcttctttgggcgttatttcgatgacccaatgcaa
aaccgtgtgactgaaatcgatgatgaggttctgaaggagcttgctgatgaagatgagacc
aatactttccatatgatagtgaagcaggactga
DBGET
integrated database retrieval system
