Sorghum bicolor (sorghum): 8085297
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Entry
8085297 CDS
T01086
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Module
sbi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8085297
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
8085297
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GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
8085297
NCBI-ProteinID:
XP_002468269
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Position
1:complement(73103810..73107443)
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AA seq
430 aa
AA seq
DB search
MGPARLPLACIVTTLIFVYMLVHHGASSQEVFPEADGPAAENSDELWLRSGPPPRVVDVD
DYGAGDAGGDHVTEAFLEAWSEACNSSDDRSVFLVPEGKAYLLMPVIFRGPCRAVSITAM
IKGTLEAPSNRSVWLDQDLQEWITFEGIDRLRVLGGGTLDGNGLQWWINSCKLNKSMRCV
IGPTALYFRRCTHLVVEELEVRDSMQMHVAIAYSWNVVVSKLLITAPGWSPNTDGIHVSN
SREVSISKCTISTGDDCISIVTGSMFVRVTSIFCGPGHGISIGSLGANNSWAHVSDVLVE
KATLLGTTNGVRIKTWQGGHGYAERISFQDISMHNVTNPIIIDQNYCDSKRPCHEQGSAV
AVRNIRYRNIHGTSASKVAVNFICSGALHCDGILMQDIYLVGEGRYATCSYTNATVVQFG
YNFPFCSAEM
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgggtcccgcgaggcttcccctagcctgcatcgtcaccacgttgatctttgtctacatg
ctagtacaccacggcgccagttcgcaggaagttttcccggaggctgacggcccggcagca
gagaattcagacgagctgtggctcaggtccggaccgccgccgagggtcgtcgacgtcgat
gactacggagccggagatgccggcggcgaccacgtcaccgaggcgtttctcgaggcgtgg
agcgaggcctgcaactcctccgatgaccggtccgtgttcctcgtgcccgagggcaaggcc
tacctcctgatgcccgtcatcttccgtggcccctgcagagctgtctcgatcactgcgatg
ataaagggaacgctggaggcgccgtccaaccgatcggtctggctggatcaggatctgcag
gagtggatcacgttcgagggcatcgatcgcctccgtgtcctcggcggcggcaccctcgat
ggcaacgggcttcagtggtggatcaactcgtgcaagctcaacaaatcaatgcgatgcgtc
atcggtccgacggcactgtacttcaggaggtgcacccacctggtggtggaggagctggag
gtgagagacagcatgcagatgcacgtcgcgatcgcctactcgtggaacgtggtcgtgtcg
aagctgctcatcactgcaccggggtggagccccaacaccgacggcatccatgtgtccaac
agcagggaagtgtccataagcaagtgcaccatcagcacaggggatgactgtatatccatt
gtgactggatcaatgtttgtacgggtaaccagcatattttgcggaccgggccatggaata
agcattggtagtctaggagcaaacaactcttgggcccatgtctctgatgtcctcgttgag
aaagccacgctgctgggcactaccaacggtgtgaggatcaaaacttggcagggaggacat
ggctatgctgaaagaattagcttccaagatatatcaatgcacaacgttactaacccaata
attatcgatcagaactactgtgactccaagagaccttgtcatgaacagggatcagcggtt
gccgtacgcaatatacgctacagaaacatacatggaactagtgcttcaaaagtcgccgtc
aattttatttgcagtggcgctctgcactgtgatggtatactaatgcaagatatttatttg
gttggagaaggaagatatgctacatgttcttatacgaacgctacagttgtacaatttggg
tataacttccctttttgcagtgcagagatgtag
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