Sorghum bicolor (sorghum): 8085873
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Entry
8085873 CDS
T01086
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8085873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8085873
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
8085873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Vps36-NZF-N
Stc1
Motif
Other DBs
NCBI-GeneID:
8085873
NCBI-ProteinID:
XP_002448778
UniProt:
C5YAJ3
LinkDB
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Position
6:complement(60080836..60086292)
Genome browser
AA seq
702 aa
AA seq
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MCVNHIDSKAGQLGVRDDNRSDFEEPFKISGMWQCSICTHENSTDNLSCELCGVLRDLSL
YFNNISEAKDGAKCRHKYSGVSILARSLFTPSSTKSKAIVFSDGFKDSRNTTGNKQATMD
ALHKTYMTRKKRHINIVPFKFDTPSPDDMVVTGLKSSRNFRKVDTKVLVKDSVDVTGKKM
IDNNILLTEKSTSMDPSASVQLDEVGGSSSNVPSSSQNTTLVLDHKLQHLSLESKPKNSK
PNIKKATSVSHYKPEPWMLESEDQEICKQLSLAIVGHVDSGKSTLCGRLRHALGLISKKQ
MHKYEKEAKEKGKGSFAYAWAMDESSDERERGITMTVAVAYFNSEKYRVVLLDSPGHKDF
VPNMISGATQADAAILVVDASIGSFEAGMGVNGIGQTKEHSQLIRSFGVENLIVAVNKMD
VVEYSKERFQSIKSQLGIFLRSCGYKDSSVTWVPLSAMANENLVTASSDSRLLSWYNGDC
LLKAIDSLPPPHRDVSRPLRLPICDVIASHTLGQVAVCGKVESGGIRTGSKVLVMPSGDI
ATVRTIERDSSTCSLARAGDNVAIGLHGIDPGHIVSGGVLCHPDFPVRVASHLELKVLVL
EITMPILVGLQFELHIHHARVSARLVKILSSLDQKTGKALKKMPRLLTARQAAVVEVKLD
KEVCVEEFSTLKALGRVFLRSQGNTVAVGIVTRILDQDLNLD
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtcaatcacatagatagtaaagctggccaactgggtgtaagagatgataacagg
tctgattttgaggagccctttaaaatttctgggatgtggcaatgctccatctgcacgcat
gaaaattctacagataatttatcttgtgagctatgtggtgtacttcgtgatctctcactg
tatttcaataatatcagtgaagccaaagatggagctaaatgcagacacaagtattctggg
gtatccatactcgcaagatctctttttacaccatctagtacaaagtcaaaggctattgtt
ttttctgatggtttcaaagacagtagaaatacaacagggaataagcaagctaccatggat
gctctacataagacatacatgactcgcaaaaagcgccacattaacatagtgcctttcaag
tttgatacaccatctccagatgacatggtcgttacaggcttaaaatcatccagaaacttt
agaaaagttgacacaaaggttctagttaaagattctgttgacgtgaccggaaagaagatg
atagataataatattcttctaactgaaaagagtacaagtatggacccaagtgcatcagta
caattggatgaagttggtggatctagtagcaatgttccttccagtagtcaaaatacaact
cttgttttggaccataagctacaacatttgagtttggagagcaaaccaaagaacagtaaa
cccaatattaagaaagcaacttccgtttcacactacaagccagaaccatggatgctcgag
agtgaagatcaagaaatctgtaaacagctaagtcttgccattgttggtcatgtggattct
gggaaatcaactttatgtggtcgattacgacatgctctgggattgatttcaaaaaaacaa
atgcataaatatgagaaagaagctaaagaaaaggggaaagggtcatttgcatatgcttgg
gctatggatgagagcagtgacgagagggagcgtggcattacaatgactgtggctgtagca
tactttaatagtgaaaaataccgtgtggttttgcttgactcccctggtcacaaggatttt
gttcctaatatgatatctggtgctacacaagctgatgcagccatcctagttgtcgatgca
tctataggctcatttgaagctggcatgggtgttaatggaattggtcagacaaaggaacac
tcacaacttattaggagctttggtgttgagaacttgatagttgctgttaataagatggat
gtggtggaatattcgaaggagcggtttcagtccattaaatcacaacttggtatctttctt
cgttcatgtgggtacaaagactcttcagtcacctgggttcctttgagtgcaatggcaaat
gaaaatttagtcacagcttcttcagattctcgtcttctatcatggtacaatggagattgt
ctgctgaaagccattgactcattacctcctccccatcgtgacgtttcaaggccactgcgc
cttccaatatgtgatgttattgcatctcacacgctgggtcaggtggctgtttgtggtaaa
gtagagtctggagggatccgaactggctctaaggtacttgtcatgccttctggagatata
gctacagtaagaaccattgagcgggattcctctacttgcagcttggctagagccggggac
aatgttgccattggtctgcatgggatcgaccctggccatattgtgtcaggtggagttctt
tgccatccagatttccccgtgcgcgtcgcttctcacttggagctgaaagttttggttcta
gaaatcaccatgccaatactggttggtcttcagtttgagctacacatacatcacgcgagg
gtgtcagcgaggttggttaaaatactgtcgtcgttggaccagaagactggcaaggcctta
aagaaaatgccacgtttgctcaccgcgaggcaggccgccgtggttgaagtgaagctggac
aaagaagtgtgcgtggaagaattctcgacgctgaaggcccttgggcgggtgttcctgcgg
tctcagggtaacaccgttgcagtgggcattgtgactcgaattctggatcaggatttgaac
ctcgattaa
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