Sorghum bicolor (sorghum): 8086250
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Entry
8086250 CDS
T01086
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8086250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8086250
03012 Translation factors [BR:
sbi03012
]
8086250
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8086250
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8086250
Translation factors [BR:
sbi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
8086250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
ABC_tran
AAA_23
NACHT
AAA_16
ATPase_2
Myosin_head
Motif
Other DBs
NCBI-GeneID:
8086250
NCBI-ProteinID:
XP_021306550
LinkDB
All DBs
Position
1:6947112..6953584
Genome browser
AA seq
1152 aa
AA seq
DB search
MRRGLRRGLGILLVPLPHVPSRPQPTSLAALLLLPRRLDGFSRHSFCSFPGGGRAVEQFS
DDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKRM
GLYSEMYGRVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPLD
KCGGNTKSGSEMAENANLDEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGAKMLE
FRRSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIICT
QPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDRNL
NGVTHVFVDEIHERGMNEDFLLIVLKELLSRRRDLRLILMSATLNAELFSSYFGGAPTIH
IPGFTHPVRAHFLEDILERSGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVEE
ALKNSSFETYGSRTRDSLVNWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDITCL
KDQLKAHPLLGDPNRVLLLACHGSMATSEQRLIFEKPPPNVRKVVLATNMAEASITINDI
VFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAF
ADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVENAVEFLKMIGALDGN
ENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSVRDPFLLPQEKKDLAGT
AKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSSQTLQAIHSLRKQFSYIL
KDSGLIDSDGNTNNSLSHNQSLVRGIICSGLFPGIASVVHRENSMSFKTMDDGQVLLYVN
SVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSIVILFGGAVTKGGMAGHLKMLDGY
IDFFMDPSLSECYLQLKEELDKLIQKKLEDPNFDIHKEGKHILFAVQELAAGDLCEGRFV
FGRETSRARLRNPEDDSKSNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAMV
EFKGMQFVGKPKRNKQLAERDAAIEALGWLTQTSGVKPQDENDDDSPLDLTDGMLKLLTR
PRRHSKNNSRKR
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcctgcgtcgcgggttgggcatcctcctcgtcccgctcccgcacgtaccc
agccgcccgcaaccgacctctctcgcggctctccttctccttccccgccgcctcgatggc
ttctcccgccactccttctgcagcttccccggcggggggcgcgccgtcgagcagttctca
gacgacgagtacgaccacgagtacgaggacctccggccgtcgtcatcggtggcgaacatc
gacgagtggaggtggaagctgagcatgctccagcgcaacgcggaggagcaggagatcatc
tccagggaccggagggaccgccgggattatgaccaaatagccaacctcgccaagaggatg
ggactctacagtgagatgtacgggcgggtcgtggttgcgagcaaggtaccactgccgaac
tacaggcctgatctggatgacaagcggccacaaagagaggtggtgatcccgctgagcttg
cagaggagagtagaaggacttgtgcaggagcatctagaccgtgcgctcttaccactggat
aaatgtggtggcaacacaaaaagtggctctgagatggctgagaatgcaaacctggatgag
cagcatgattctctgcttgatcggtcagtcatggagaagatacttcagaggaagagcatt
cggatgcgaaattttcagagaagttggcaggaatcacctgaaggtgctaagatgctagag
ttccggagatcacttccagcatacaaagaaaaagaaaggcttctagcagccattgcacgc
aatcaggttattgtaatttctggtgagacagggtgtggtaaaacaacacagctgcctcag
tttgtattggaatcagagattgagtctggtcgaggggccttttgtaacataatttgtaca
cagccacgaagaatatctgcaatggcagttgcagaaagggtatccacagagagaggagaa
aatcttggcgaatcggttggctataaagtccgtttggagggaattaagggaaaagataca
catttgcttttctgcaccagtggtatcttactaagacgattactgagtgaccgaaacttg
aatggtgtgactcatgtatttgttgatgaaatacatgaaaggggcatgaatgaagatttc
ctattgattgtactgaaagagctgttatcacggcgccgtgatttgaggttgatattgatg
agcgctactctaaatgcggaactcttctcaagttactttggaggagcgccaactatccat
attcctggattcacacatccagtaagggcacattttttggaagacatattagagaggtca
ggctacaagttgacctcaagcaatcaacttgatgattacgggcaagataaagtctggaaa
actcagagacagctattgcctagaaaaaggaaaaatcaaattactacacttgttgaagaa
gcccttaaaaattcaagcttcgagacctatggttccaggacacgtgattctctagtgaat
tggaatcctgattgcatcggtttcaacctcattgaggctgttctgtgccacatatgtcgc
aaagagcgaccgggtgctgttttagttttcatgactggatgggatgatattacttgcttg
aaggatcaactgaaagcacatcctttgttaggtgatccgaatagggttttgctgcttgca
tgccatggttctatggctacttctgagcagaggctaatttttgagaaaccacctcctaat
gttcggaaggtagtccttgccacgaacatggcagaagcaagtattacaataaatgatatc
gtttttgtcgttgattgtggtaaagcaaaggaaaccacatatgatgctctaaacaatact
ccctgcttactcccctcatggatttcaaaagcttctgcccgtcagaggaggggtagagct
ggccgtgtgcaacctggagaatgctatcatctgtatcctagatgtgtgtatgatgcattt
gcagactatcagcttccagagcttcttagaactcctttgaattcattatgtctgcagata
aaaagtttgcaagtcggcagcattggggagttcctatcagctgctctacagcctccagaa
ccactagctgtcgaaaatgcagtggaattcctgaagatgattggagcattagatggaaat
gaaaaccttactgatcttggacggtacctttccatgcttccagttgatccaaaattggga
aagatgcttataatgggtgcagtttttcggtgcatagatcctatactcactgtagttgct
ggactgagtgttcgggatcctttcctgttgccacaggaaaagaaggatttggcaggaaca
gcaaaatctagattctcagcaaaggattatagtgatcatatggccctcgttcgggcttat
gaaggatggaaggatgcagagagagaagggtctgcttatgaatactgctggagaaatttc
ctttcttctcaaacactacaagccattcactcacttcggaagcaattcagctatatttta
aaggattccggtttgatagactctgatgggaatacaaataacagtttgagccataatcaa
tcattggtccgcggtattatatgttctgggctttttcctgggatagcatctgttgtgcat
cgagaaaactcaatgtcctttaagaccatggatgacggccaagttcttctttatgttaat
tcagtgaatgcaaaatatcagactatcccatatccatggctggtctttggtgagaaggtg
aaagtgaatgctgtcttcatccgtgattcaactggagtatcagactccatagtgattctg
tttggtggtgctgtaacaaaaggaggcatggctgggcacttgaagatgcttgatggctac
attgatttctttatggatccgagcctgtctgaatgctacctgcaactcaaagaagaactt
gataaacttatacagaagaagcttgaagacccaaactttgacatccacaaggaaggcaag
cacatcctattcgctgtacaagagcttgctgccggtgacctatgcgaaggaaggtttgtg
tttggccgtgagacgagccgtgccaggctccggaatcctgaggacgacagcaagagcaac
atcataaaggacgggatgaaccccaagagcctgctgcagacactgctgatgcgggccggc
cacaccccacccaagtacaagacgaagcacctcaagacgaacgagttcagggccatggtg
gagttcaagggcatgcagttcgtggggaagccgaagcggaacaagcagctcgcggagcgg
gacgccgccatcgaggcgctggggtggctgacgcagacgtccggcgtgaagccacaggac
gagaacgacgatgactcgccgctggacctgactgatggcatgctgaagctgctcaccaga
ccgaggcggcactcgaagaataactctagaaaacgatga
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