Syngnathoides biaculeatus (alligator pipefish): 133490511
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Entry
133490511 CDS
T09681
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133490511 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133490511 (prpf4)
Spliceosome [BR:
sbia03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
133490511 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
WD_LRWD1
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
WD40_like
WD40_RFWD3
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
133490511
NCBI-ProteinID:
XP_061656661
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All DBs
Position
17:complement(23552727..23558094)
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AA seq
510 aa
AA seq
DB search
MSDDEDSAPVPKKARVFYGSLEEKERERLNAELASGPATGSDGVKAGIEAGNINISSSET
LELEEHVNVRQQEALAEFERRRRARQITVSTDDTEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRRDEDRAKRSQEECQQTWYHEGPASLKDARLWMARYSLPRSMKR
LEAARAQKGMCEAARTIRQQELNKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCNLIRTLRGHNTNVGAVVFRPQAGVSLDRSDVSLASCAADGSVKLWNLLS
DEPVSSIEDHSERVSRACWHPSGRFLGTTCYDHSWRLWDMEVQEEILHQEGHSKGVHDLH
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGYHLATGSGDNTCK
VWELRNRKCLYTIPAHQSLLSGVRFQPTDGHFLLTCAYDNMAKVWSHPGWMPLKTLAGHE
GKVMGVDVSPDGKLIATCSYDRTFKLWVSE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgaagactccgctccggtcccgaagaaagctcgcgtgttctacggaagc
ctggaggaaaaagagcgcgaacgtctgaacgcagagctcgccagcggcccggcgacggga
agcgatggggtcaaggccggaatcgaggcgggaaacatcaacatttcgtcttccgaaacg
ctggagctggaggagcacgtcaacgtccggcaacaggaagcgctcgcagagttcgagagg
aggcggcgagcgcgacagatcaccgtctccaccgacgacaccgaagtcaaagcgggcctg
cgagccctcggggagcccatcaccttgttcggggaggggccggcggatcggcgggagagg
ctgcgcagcgttttgtccgtggtgggtccagatgccctgaagaagtccaggagagacgaa
gacagagccaagcgatcgcaggaggagtgccagcagacgtggtaccacgaaggccccgcc
tctctcaaggacgcacgtctctggatggcgcgttactccctgcccaggtccatgaagcgc
ctggaggcggcccgggcccaaaagggaatgtgcgaggcggccagaaccatccggcaacag
gagctgaacaagagcctgaggaacttgaacaacttctgcagtcagatcggcgacgatcga
ccgatcagcttctgccacttcagtcccgactccaaaatgctggccaccgcctcctggagc
gggttgtgcaagctgtggtccgttcccgactgcaacctgattcgcacgctcagaggccac
aacaccaacgtgggcgcggtggtcttccgcccccaggccggcgtgtctctcgaccgatcg
gacgtcagtttggcctcgtgcgccgcggacggatccgtcaagctgtggaacctgctcagc
gacgagccggtgtcgagcatcgaggaccacagcgagcgggtttctcgagcgtgctggcat
ccgtccggaaggttcctgggaacaacctgctacgatcactcgtggcgcctttgggacatg
gaagtccaggaggagattctgcatcaggaaggtcacagcaaaggcgttcacgatctccac
tttcatcccgacggatcgctggctgctaccggcggactggacgccttcggaagggtttgg
gatctccgcacgggccgttgcgtggtcttcctggaaggtcacctgaaggagatctacagc
gtgcacttctcgcccaacggctaccacttggcgacggggagcggcgacaacacctgcaag
gtttgggagctcaggaacaggaagtgcctttacaccatccccgcccaccaaagcctcttg
tcgggtgtaagattccagcccaccgacggccacttcctgttgacgtgcgcgtacgacaac
atggcgaaggtttggagccaccccggctggatgccgctgaagacgctcgccggccacgag
gggaaggtgatgggcgtggacgtgtcccccgacggcaagctgatcgccacgtgctcctac
gacagaacctttaaactttgggtgtcggaatga
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integrated database retrieval system
