Syngnathoides biaculeatus (alligator pipefish): 133490664
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Entry
133490664 CDS
T09681
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133490664 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133490664 (mtrex)
03041 Spliceosome [BR:
sbia03041
]
133490664 (mtrex)
03009 Ribosome biogenesis [BR:
sbia03009
]
133490664 (mtrex)
03016 Transfer RNA biogenesis [BR:
sbia03016
]
133490664 (mtrex)
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133490664 (mtrex)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133490664 (mtrex)
Spliceosome [BR:
sbia03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133490664 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
133490664 (mtrex)
Ribosome biogenesis [BR:
sbia03009
]
Eukaryotic type
Pre-60S particles
Helicases
133490664 (mtrex)
Transfer RNA biogenesis [BR:
sbia03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133490664 (mtrex)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
133490664
NCBI-ProteinID:
XP_061656995
LinkDB
All DBs
Position
17:complement(17485507..17502438)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADPFGDLFSVFDDEQKPTTSKKPVTSVTPETGKADVQNNDNDARPAARTKREPPDSDGG
EELVLGKKPRLDPSSVNDLNLAEFMPQVNVQPVETVEGCSHEVALPVGDEYKPLKPRVGN
AAKEYPFILDPFQQEAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVF
DEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTEY
RPTPLQHYVFPAGGDGLHLVVDENGDFREDNFNTAMQILRDAGDSGSSNTGAKWDPKGRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNKEEEKHLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
SVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVERI
KKLEEEYHTIHIPNEESVVTYYRYRQQLAKLGEDIQHFIHKPKYCLPFLQPGRLVKVKNE
DADFGWGVVVNFSKKSNVKVSTDAEPLFVAEVLLHCSKDSVKEAATEAAKPAAPGENGEM
QVVPVMLHLLTALSSVRLYIPKDLRPFDNRQLMLKSIREVQKRFPDGVPLLDPVDDMGIQ
DAGLKKVIRKVEFLEHRMYSHPLHSDPNLDAVYLLCEKKARIEADVHAAKRELKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEVKGRVACEISSADELLLTEMMFNGLFNDLTVEQAA
ALLSCFVFQENASELPKLTEQLAAPLRQMQECAKRIAKVSADAKLDVDEDEYLGQFKPHL
MDVVHAWANGATFAHICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccctttggagatttgtttagcgtgtttgacgacgaacagaagcctactacg
agtaaaaagcccgtgacctcagtcactccagaaacagggaaagcagacgttcagaacaat
gacaacgatgctcgcccggctgccaggaccaagagagagccgccagacagcgacggcgga
gaagagctggtcctggggaagaagcctcgtctcgacccgtcctcagtcaatgacttaaat
cttgcagaatttatgccccaagtcaatgtacagccagtggagacggtggaaggctgctca
cacgaggtcgctctgccagtcggtgatgaatataaaccacttaaaccccgagttggaaat
gctgccaaggagtatccgttcatcctggaccccttccagcaggaggccattttgtgcatc
gacaacaaccagtctgtgctcgtctccgcgcacacctcagccggaaagaccgtctgcgcc
gagtatgccattgcgctggccctgcgtgagaaacagcgtgtcatatttacaagtcccatc
aaggcactgtccaatcagaagtaccgggagatgtatgaggagtttcaagacgtgggactg
atgacgggcgacgttaccatcaaccccaccgcctcttgcctcgtcatgacgacagagatc
ctaaggagcatgctgtaccgcggctcagaaatcatgagggaagtggcgtgggtcgtcttc
gatgagatccactacatgagggatgccgagcgtggcgtggtatgggaggagaccataatt
ttgcttcccgacaacgtgcattatgtctttctgtcggccaccatccccaatgccaggcag
ttcgccgagtggatatgtcaccttcataagcagccttgccacgtggtctacaccgagtac
cgacccacgccgttgcaacactatgttttcccagcagggggcgatggactacacttagtg
gtagatgagaatggagacttcagggaggataacttcaacacagccatgcagattttgaga
gacgctggcgattccgggagcagcaatacgggcgctaagtgggaccccaaaggacgcaaa
gggggaacaaaaggtccgtccagcgtattcaagatcgtgaagatgatcatggagaggaac
ttccagcctgtcatcatcttcagcttcagtaaaaaggaatgtgaagcatatgctctgcag
gtggccaagttggatttcaacaaggaagaggaaaagcatctggtggaggaagtgttcaac
aacgcagtggactgcctctcagatgaagacaagaaacttcctcaggtggagcacgtgctg
ccgctgttgaagagaggcatcggcatccaccacggcggtctcctgcccatcctgaaagag
accatcgaaatcctcttctcggaaggcctgatcaaggccctgtttgccactgagacgttc
gccatgggcatcaacatgccggcgcggactgtgctcttcaccagcgctcgcaagtttgat
ggcaagaatcaccgctttatcacctcaggtgagtacatccagatgtcggggcgcgcaggt
aggagaggaatggacgacaggggcatcgtaatcttcatggtggacgagaagatgagtccg
tctgtgggcaaacagctccttaagggctcggcggaccctctgaacagcgccttccacctg
acgtacaacatggtgctcaacctgctgcgggtggaggagatcaaccccgagtacatgctg
gagaaatccttctaccagttccaacactaccgagcgctgcccggcgtcgtcgaaaggatt
aagaagctggaggaggagtaccacaccatccatattcccaacgaggagagcgtggtcacc
tattaccggtaccgccagcagctggccaagctgggagaagacatccagcatttcatccac
aagcccaaatattgtctgcccttcctgcagcccggccgcctcgtcaaggtgaaaaatgaa
gacgcggacttcggctggggcgtcgtcgtcaacttctcaaagaagtcgaacgtgaaggtc
agcactgacgccgagccgctcttcgtggccgaggtgctgctgcactgcagcaaggacagc
gtcaaggaggcggccactgaggcggccaaacccgccgcgccgggcgagaacggggagatg
caggtggtccccgtgatgcttcacctgctgacggccctcagctccgtgcgtctttacatc
cccaaagacttgagacccttcgacaaccgccagctcatgctcaagtccatccgggaagtg
cagaagcgcttccctgacggcgtccccctcctggaccccgtggacgacatgggcatccag
gacgcggggctgaagaaggtgatcaggaaagtggagtttttggagcaccgaatgtactcg
cacccgctgcacagcgaccccaacctggacgccgtctacctgctgtgcgaaaagaaagct
cggatcgaggccgacgtgcacgcggccaagcgcgagctgaagaaggctcgcacggtgctg
cagatggacaagctcaagtgcaggaagcgagtgctgcggcgcctcggcttcgccagcccg
tccgacgtcatcgaggtgaagggccgcgtggcttgcgagatcagcagcgccgacgagctg
ctgctgacggagatgatgttcaacgggctcttcaacgacctgacggtggaacaagccgcg
gcgctgctctcctgtttcgtcttccaagaaaatgccagcgagctgccaaaactgacggag
caacttgcggcgcccctcaggcaaatgcaggagtgcgccaagcgcatcgccaaggtgtcg
gcggacgccaagctggacgtggacgaggatgagtacctgggccagttcaagcctcacctc
atggacgtggtccacgcctgggccaacggcgccaccttcgcgcacatctgcaagatgacc
gacgtctttgaaggaagcatcatccgctgcatgcggcgtctggaggaagtgctccgacaa
atgtgctcagccgccaaggccatcggcaacacggagctggagaataagtttgccgaagga
atcacaaagatcaagcgggacatcgtgtttgctgccagcctctatttgtaa
DBGET
integrated database retrieval system
