Syngnathoides biaculeatus (alligator pipefish): 133490692
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Entry
133490692 CDS
T09681
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133490692 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133490692 (nup54)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133490692 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
133490692
NCBI-ProteinID:
XP_061657048
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All DBs
Position
17:complement(17336942..17347671)
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AA seq
568 aa
AA seq
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MAFNFGTGAASNPAASTTGFSFGSFGAKTTASTAFGFGTPATTTTAASGFGTLTAPSFGT
ATTTAAAPATGFSFGSTSTGSFGGFGTTTTTAAAPGSTFSFASSANTTGSLFGATQNKGF
GFTSGLGAGTAAGTTGFGTGLGTTSLGGFGGFNLQPTQQQQGGLFGQPAQQQAQPNQLYQ
QVTALSAPTLLGDERDSILAKWNQLQAYWGTGKGYFSNNNPPVDFNQENPFCRFKAVGYS
CVPVSKDEDGLVVLVLNKKEMDVRAQQQPLVESLHKVLGSNQTLSVNVDGVKSLPNDQTE
VIIYVVERSPNGTSKRIPASTLFTYLEQANIKVQLTQLGVAMSVTRTELSPAQLKQLLQN
APAGVDPIIWEQAKVDNPDPEKLIPVPMVGFKELLRRLQIQEQMTKQHQTRVDIVSNDIS
ELQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQS
ELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYNVDADLLREIRQHLKQQQDGLSHLIS
VIKDDLEDIKLIEHGLSDSGHVRGGILS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttaattttggcacgggtgcagcctcaaatcctgctgctagcacaaccgggttc
tcattcggttcgtttggtgcaaaaaccaccgcatcaacagcatttggctttggcacccct
gcaactaccaccacagctgcctctggatttggcacgctcaccgctccgagttttggcacg
gcgaccactacagccgccgcacctgcaacaggattttcttttggctccaccagcacggga
agctttggtggctttggcacaaccacgaccacagccgccgcgccgggttccacgtttagc
ttcgcatcctcggccaacactacagggagcctctttggggccacacagaacaaaggcttc
ggtttcacttccggcctcggtgccggaacagccgccggcaccactgggtttggaactgga
ctgggaacaaccagtctgggtgggtttggtggcttcaatctccagcccactcagcagcag
cagggaggcttgtttggtcagcctgcccagcagcaggctcagcccaatcagctgtaccag
caggtgacggctttgtcggcgcccactctgctgggggacgagcgcgactccattctggcc
aaatggaaccagctgcaggcctactggggcacgggcaagggctacttcagcaacaacaac
ccccctgtagacttcaaccaggaaaaccccttctgcaggttcaaggctgtgggctacagc
tgcgtgccggtcagcaaggatgaggacggcctggtggtcttggtcctcaacaagaaggag
atggacgtgcgagcgcagcagcagccgctcgtggagtcgctgcataaagttctaggaagc
aaccagacgttgagcgtcaatgtggacggcgtcaagtccctgcccaacgaccagacagag
gtgatcatttacgtggtggagcgctccccgaacggcacgtccaagcgcatccccgcctcc
acgctcttcacgtacttggagcaggccaacatcaaggtgcagctcacgcagctgggcgtg
gccatgtcggtcacgcgcaccgagctctcaccggcgcagctcaagcagcttctccagaac
gccccagcaggggtggaccccattatctgggagcaggccaaggtggacaaccctgaccca
gagaagttgatcccagtccccatggtgggttttaaagagttgcttcgtcgacttcaaatc
caggagcagatgaccaaacagcatcagacccgagttgacatagtctccaacgacatcagc
gagctccagaagaaccaggcgacaactgtggccaagatcgcccaatacaagaggaagctg
atggacctctcacaccgcgtgttgcaggtgctgatcaaacaggagatccagaggaaaagt
gggtacgccatccaggtggatgaggagcaccttcgggtgcagctggacaccattcagtcg
gaactcaatgcccccacgcagttcaagggtcgcttgaatgagctgatgtcccaaatccgc
atgcagaaccactttggtgccgtgcgatcggaggagcgctacaatgttgacgcggacctc
cttcgtgaaatccgacaacacctaaagcagcagcaggacggcttgagtcacctaatcagc
gtgattaaagacgacctggaggacatcaaactcatcgagcacggcctgagcgacagcgga
cacgtacgaggcggcatcctcagttga
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