Syngnathoides biaculeatus (alligator pipefish): 133490857
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Entry
133490857 CDS
T09681
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03320
PPAR signaling pathway
sbia04148
Efferocytosis
sbia04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133490857
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
133490857
03320 PPAR signaling pathway
133490857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbia03000
]
133490857
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sbia03310
]
133490857
Transcription factors [BR:
sbia03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
133490857
Nuclear receptors [BR:
sbia03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
133490857
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
133490857
NCBI-ProteinID:
XP_061657413
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All DBs
Position
17:complement(13790423..13888350)
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AA seq
501 aa
AA seq
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METKPFLSLGFLKPQCSLAPPMQRARSNEACSCFSGMCSLHHRRLSSDSSGQMGSSPLGS
PNSHRGMHPSLLSPTTMGPSGSLHSPISTLSSPMNGLASPFSVISSPMGPHSMTSPGMGY
GPSVSPQLNSPMNSVSSTEDIKPPLGINGVMKVPAQPSGTALSLTKHICAICGDRSSGKH
YGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREVLL
HAAVQEERQRAKERNENEVESTSCANEDMPVEKILEAEQAVEPKTETYIDTNLGVPSNSP
NDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVK
DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK
GLSNPSEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL
IGDTPIDTFLMEMLEAPHQMT
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaagccgttcttgtcattggggttcctaaagccccagtgctcgttagctcct
ccgatgcagcgagcccgctcaaatgaggcctgttcctgtttcagtggcatgtgttccctc
catcatcgtcgcctatcctcagactcatcaggtcaaatgggctcttcacccctgggctcg
cccaactcccatcgaggaatgcacccatctttgctcagtccaacgaccatggggccctct
ggatcgcttcactctcccatcagcacgttgagctcgcccatgaatggtctggcctcgcct
ttctctgtcatcagctcgcccatgggcccccactccatgacctcgcccggcatgggctac
ggtcccagtgtcagcccccagctgaactcgccaatgaactcggtcagcagcacagaggac
attaagcccccgctgggcatcaatggcgtgatgaaagtacccgctcagccctctggcaca
gcgctgtcgctcaccaaacacatctgtgctatctgcggggaccgctcctcaggtaaacac
tacggtgtatacagctgtgagggctgcaagggtttcttcaaaaggacagtgcgcaaagac
ctgacctacacgtgtcgtgacaacaaggactgcgtcattgacaaacgccagaggaaccgg
tgccaatactgccgctaccaaaagtgtttagccatgggcatgaagagagaagtgttatta
catgcagccgttcaggaggagcgccagcgagccaaggaaaggaatgagaatgaggtggag
tcgaccagctgcgccaacgaggacatgcccgtggagaagattttggaagccgagcaggcg
gtggaacccaaaaccgaaacctacatcgacaccaatcttggagttccatccaattcgccc
aacgaccccgtgacaaacatctgtcaagctgctgacaaacagctctttacgttggtcgaa
tgggccaagaggattccccacttctctgagctcccactggacgaccaggtcatccttcta
cgagcaggttggaatgaactcctcattgcgtcgttttcgcaccgttcgatagccgttaag
gacgggattctgttggccaccgggctgcacgtccaccgcaacagtgcccatagtgccggt
gtgggagccatctttgacagagtgctcacggaactggtgtcaaagatgcgggatatgcag
atggataagacagaactggggtgccttcgagctatagtcctttttaacccagactccaaa
ggtttgtcaaacccaagtgaggtggaggctctgagagagaaagtctacgcgtctttagag
gcctactgcaaacacaagtacccggagcagcctggcagatttgccaagctgctgctgagg
ttaccggcactgcgctccatcggcctcaagtgtctggagcacttgttcttcttcaagctc
attggcgacacgcccatcgacaccttcctcatggaaatgctcgaagcaccgcatcaaatg
acataa
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