Syngnathoides biaculeatus (alligator pipefish): 133490909
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Entry
133490909 CDS
T09681
Symbol
thbs4b
Name
(RefSeq) thrombospondin-4-B isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04145
Phagosome
sbia04510
Focal adhesion
sbia04512
ECM-receptor interaction
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133490909 (thbs4b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
133490909 (thbs4b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
133490909 (thbs4b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133490909 (thbs4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbia04131
]
133490909 (thbs4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbia04147
]
133490909 (thbs4b)
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133490909 (thbs4b)
Membrane trafficking [BR:
sbia04131
]
Endocytosis
Phagocytosis
Opsonins
133490909 (thbs4b)
Exosome [BR:
sbia04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
133490909 (thbs4b)
Exosomal proteins of colorectal cancer cells
133490909 (thbs4b)
Exosomal proteins of bladder cancer cells
133490909 (thbs4b)
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133490909 (thbs4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF
cEGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
133490909
NCBI-ProteinID:
XP_061657587
LinkDB
All DBs
Position
17:17809695..17824571
Genome browser
AA seq
776 aa
AA seq
DB search
MVELKTMLNKDQEGLHELKLVVGDTFENVASLQDCHFQQRDSVQTLGVNTKQLSNQMMEL
TKVINELKDILIQQVKETSFLTNTISECQACGLGGTEAVKPRCGPGVCFRDGACRETAVG
VECGPCPDGYTGDGFNCDDVDECQFKPCFPGVKCVNTAPGFRCDACPLGYTGLPIEGVGE
LFAQTNKQVCDDIDECKGPDNGGCAANSVCHNSEGSYRCGGCKTGFTGDQVKGCEPEISC
ANSLTNPCDVNAQCVAKRDGSVSCQCGIGWAGNGFLCGKDTDIDGYPDEKLKCKDPTCKK
DNCVYVPNSGQEDADRDGRGDACDEDADGDGIPNEQDNCWLKPNVDQRNSDKDTHGDACD
NCRLVENPDQRDTDGDGKGDACDDDMDGDGLKNFLDNCQHVKNPDQVDRDGDGVGDACDS
CPDIPNPNQSDIDNDLVGDSCDTNQDSDGDGHQDTKDNCPFVINSSQLDTDKDGLGDECD
DDDDNDGIPDVIAPGPDNCRLVPNPDQTDDNNDGVGDICESDFDQDKIVDQIDNCPENAE
VTLTDFRAFQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGT
FHVNTVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSRSG
PGEHLRNSLWHTGDTQDQVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGSEL
VADSGVTIDTTMRGGRLGVFCFSQENIIWSNLRYRCNDTIPEDFQEFRAQHGVDSL
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggtggagctgaagaccatgctgaataaagatcaggagggcttgcacgagctcaagctg
gtggtcggagacacttttgagaacgttgcctcgttgcaagactgccatttccagcaaaga
gactccgtgcaaaccctgggcgtcaacaccaagcagctgtccaatcagatgatggagttg
accaaagtgatcaacgagctgaaagacatcctcatccagcaggtgaaagaaacctccttc
ctcaccaacaccatctccgagtgtcaggcctgcggcctgggcggcaccgaagcggtgaag
ccgaggtgcggcccgggcgtgtgtttccgcgacggcgcctgccgggagacggcggtcggc
gtggagtgcgggccttgccccgacggctacaccggagacggcttcaactgcgacgacgtg
gacgagtgccagttcaagccttgcttccccggggtcaagtgcgtgaacacggcgccgggc
ttccgctgcgacgcctgcccgctgggctacaccggcctgccaatagagggcgtaggagag
ctgttcgcccagaccaacaaacaggtgtgcgacgacatcgacgaatgcaaaggacccgac
aacggcggctgcgcggccaattccgtctgccacaactcagagggctcctaccgctgcggc
ggctgcaagacgggcttcacgggcgaccaggtgaaaggctgcgagcccgagatcagctgc
gccaacagcctgaccaacccctgcgacgtcaacgcgcagtgcgtggccaagagggacgga
tccgtctcctgccagtgtggaatcggctgggccggaaacggattcctgtgcggaaaggac
accgacatcgacggctatcccgacgagaagctcaagtgtaaggaccccacatgtaaaaag
gacaactgcgtctacgttccaaactccggccaagaggacgccgaccgagacggccgggga
gacgcctgcgacgaggatgcggacggcgacggcattcccaacgagcaggacaactgctgg
ttgaagcccaacgtggaccagagaaacagcgacaaggacacgcacggcgacgcctgcgac
aactgccgtctggtggagaacccggaccagagagacacggacggcgacggcaaaggagac
gcctgcgacgacgacatggacggagacggcctcaagaacttcctggacaactgccagcac
gtgaagaacccggaccaggtggaccgcgacggcgacggcgtgggcgacgcgtgcgacagc
tgccctgacatcccgaaccccaaccagtccgacatcgacaacgacctggtgggcgactcg
tgcgacacgaaccaggacagcgacggcgacggccaccaggacacgaaggacaactgcccc
ttcgtgatcaacagctcgcagctggacaccgacaaagacggcctgggcgacgagtgcgac
gacgacgacgacaacgacggcatcccggacgtcatcgcgcccggaccggacaactgcagg
ctggttcccaacccggaccagactgacgacaacaacgacggcgtgggcgacatttgcgag
tccgacttcgaccaggacaaaattgtggaccagatcgacaactgccccgaaaacgcggag
gtgacgctgacggacttcagggccttccagacggtggtgctggacccggagggtgacgcc
cagatagaccccaactgggtggtcctcaaccagggaatggaaatcgtccagaccatgaac
agcgatccgggtctggctgtgggttacacggccttcagcggcgtcgacttcgaggggacc
ttccacgtcaacacggtgacggacgatgactacgccggcttcatcttcggctaccaggac
tcgtcgtccttctacgtggtcatgtggaagcagacggagcagacgtactggcaggccacg
ccgttccgagccgtggccgagcccggcatacagctcaaggcagtcaaatcccgatctgga
cccggggagcatctgaggaactccttgtggcacaccggggacacccaagaccaggtgcgc
ctcctgtggaaggacccccgcaacgtgggctggaaggataaagtgtcctaccgctggtac
ctgcagcaccgcccgcaggtcggatacatcagggctcgcttctacgagggatccgagctg
gtggccgactcgggcgtgaccatcgacacgaccatgagggggggcagactcggcgtcttc
tgcttctcgcaggaaaacatcatctggtccaacttgagataccgctgcaacgacaccatc
ccagaggacttccaagagttccgcgctcaacacggcgtcgattccctctaa
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