Syngnathoides biaculeatus (alligator pipefish): 133490935
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Entry
133490935 CDS
T09681
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133490935
03041 Spliceosome [BR:
sbia03041
]
133490935
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
133490935
Spliceosome [BR:
sbia03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
133490935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
Calcipressin
RRM_Nup35
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
133490935
NCBI-ProteinID:
XP_061657646
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All DBs
Position
17:complement(20967808..20979445)
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AA seq
469 aa
AA seq
DB search
MRLRRQHRAPRCAIFVGCPIVRTGASLPPPHHHPRQPRRHYRLRTAPHTKKKHERRRCHR
LLPTTVADLPPATAFATRCWPAKFESRMDDEQPKTLYVGNLSRDVTEALVLELFGQIGPC
KSCKMIVDTAGHDPYCFVEFYEHRHAMATIAAMNGRKILGKEVKVNWATTPTSQKKDTSS
HFHVFVGDLSPEITTDDIKAAFGPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAI
QQMGGQWLGGRQIRTNWATRKPTPKTTNETSTTKQLSFDEVVNQSSPSNCTVYCGGVTAG
LTEQIMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHEAAAHAIVSVNGTSVEGFVVKCYWG
KETTDLVSPIQQVQMPQSTVSFAAQPYSQWGQWYGNTQQIGQYVPNGWQVPSYGVYGQSW
DQQCYNPLPSGAGWTGVGAVSNGGMVEPGQGVNGTMLANQAGTAGFHTH
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcgccttcgtcgtcagcacagggccccgcgctgcgccatctttgtcggctgccccatt
gttcgcaccggagcttctctacccccccctcaccaccaccctcgtcagcctcggcggcat
tatcgtcttcgtactgcgccacacacaaaaaaaaaacacgagcggagacggtgtcaccgg
ctgctgcccacgacggtcgcggacttgcctcccgccactgcgtttgcgactcggtgttgg
ccagcaaagtttgaaagcaggatggacgacgagcagcccaaaaccctgtatgtggggaac
ctgtcgcgagatgtgacggaagccctcgtcctggagctctttggccagatcggaccctgc
aagagctgtaaaatgattgtcgatacggcgggtcacgatccctactgctttgtggaattc
tatgaacacagacacgccatggccaccatagcggccatgaacggtcggaaaattctgggt
aaggaagtcaaggtcaactgggccactacgccgaccagccaaaagaaggacacaagcagt
cacttccacgtttttgtcggggatctaagtcctgaaatcaccacggacgacatcaaggcg
gcattcggtccttttgggaaaatatctgattgccgggtggtgaaggacatggccaccggc
aagtccaaaggctacggcttcgtgtccttcttcaacaaatgggacgcggagaacgccatc
cagcagatgggaggccagtggctgggagggcggcagatcaggaccaactgggccacacga
aagcccacgcccaaaaccaccaacgaaacgagcaccacgaagcagctttccttcgatgag
gtggtgaaccagtccagtcccagtaactgcacggtctactgcggcggagtcacggcaggc
ctcacggagcaaatcatgagacagaccttttcgccttttggacaaatcatggaaatccgc
gttttcccggataagggctactctttcgtcaggttcaattcgcacgaggcggccgcccac
gccatcgtctccgtcaacggcacgtcggtggagggtttcgtggtcaagtgttactggggc
aaggagaccacagacttggtcagccccatacagcaggtccagatgccgcagagcacggtg
agcttcgcggcgcagccctacagccagtgggggcagtggtacggcaacacgcagcagatt
ggccagtacgtgcccaacggctggcaggtgcccagctacggtgtctacgggcagagctgg
gatcagcagtgctacaatcctcttccctccggcgccgggtggaccggcgtgggcgccgtg
agcaacggcggcatggtggaacccggccagggcgtcaacggcaccatgctcgccaatcag
gcgggcacggccggcttccacacccactga
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