Syngnathoides biaculeatus (alligator pipefish): 133491360
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Entry
133491360 CDS
T09681
Symbol
hmgb1a
Name
(RefSeq) high mobility group protein B1a
KO
K10802
high mobility group protein B1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03410
Base excision repair
sbia04140
Autophagy - animal
sbia04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
133491360 (hmgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
133491360 (hmgb1a)
09143 Cell growth and death
04217 Necroptosis
133491360 (hmgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sbia03036
]
133491360 (hmgb1a)
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133491360 (hmgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbia04147
]
133491360 (hmgb1a)
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
133491360 (hmgb1a)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
133491360 (hmgb1a)
MMR (mismatch excision repair)
Other MMR factors
133491360 (hmgb1a)
Exosome [BR:
sbia04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
133491360 (hmgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
RNA_pol_3_Rpc31
HMG_box_5
Ribosomal_60s
NOA36
Motif
Other DBs
NCBI-GeneID:
133491360
NCBI-ProteinID:
XP_061658337
LinkDB
All DBs
Position
18:10621525..10626163
Genome browser
AA seq
210 aa
AA seq
DB search
MRKDPAKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFE
DLAKQDKARYEREMMNYVPARGGKNKKFKDPNAPKRPPSAFFIFCSEYRPKVKGETPGLT
IGDVAKKLGEMWNRTSAESRVPFEKKADKLKEKYKKDVAAYRAKGKAGGGSAPVAKAAAK
AAKDDDDDEDDDEDEEDDEEDEDDEDDDDE
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaagatccggcaaagcccaggggcaagatgtcctcctacgcctactttgtgcag
acctgcagagaggagcacaagaagaagcatcccgaggcctcggtcaacttttccgaattc
tccaagaagtgctccgagagatggaagaccatgtccgcaaaggagaagggcaagtttgag
gacctggccaagcaggataaggcccgttatgaacgggaaatgatgaactacgtgccagcc
cgcggagggaagaataagaagttcaaggaccccaatgctcccaagaggcccccgtctgcc
ttcttcatcttctgctctgagtaccgtcccaaggtgaagggtgagactccaggactgacc
atcggggacgtggccaagaagctcggggagatgtggaacagaacctcggccgagagcagg
gtgcccttcgagaagaaagcagacaagctgaaggagaagtacaagaaggacgtggcagca
taccgcgccaagggcaaggcgggcggcggcagcgccccagtggccaaagcggcggctaag
gcggcgaaggatgacgacgacgacgaggacgacgacgaagacgaggaggacgacgaggag
gacgaggatgacgaggacgatgacgacgagtaa
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integrated database retrieval system
