Syngnathoides biaculeatus (alligator pipefish): 133491675
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Entry
133491675 CDS
T09681
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03440
Homologous recombination
sbia03450
Non-homologous end-joining
sbia04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133491675 (rad50)
03450 Non-homologous end-joining
133491675 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
133491675 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbia03032
]
133491675 (rad50)
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133491675 (rad50)
DNA replication proteins [BR:
sbia03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
133491675 (rad50)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
133491675 (rad50)
BRCA1-C complex
133491675 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
133491675 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SMC_N
SbcC_Walker_B
ABC_tran
zf-met
AAA_29
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
133491675
NCBI-ProteinID:
XP_061659099
LinkDB
All DBs
Position
18:complement(18836926..18849860)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYATAGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIHRSMSCTQKAKNYSFKSLEQVITR
LKDGAKVSLSSKCGELDREMISALGVSKPVLNHVIFCHQEDSNWPLSEGKALKEKFDSIF
AATKYIKALDTMRQLRLKQNNTVRECQVELRFLKQNKEKAQQIREIVANKEAQLMASKDN
IQLIESQIDPLENRLVDIDLKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
TEQLQELYQNHQKTVREKERRLTDCQKEMERAGRECLRLNRVKADLLVEQGRLQLEADRH
TQNIKNRDTEVRLLSSQLEVEGYDRPPFTTIQLASFHRHVTQRLEQEKDMVAQVMLDLQE
KEEQKQQSIDEIRDKKTGLERTVELKRDLQGKKQQELRNVRTELERLEGSSGRMQELENE
LGKAEHELQSALQMSNVEELKVEVVELQKEKAELDRTQRQLDHEMGLLNIHTTVRTQMEM
LTKDKKEKEEQVRKIKSRHSDDLVSLLGHFPNKRELEDWLYAKSKEINSTRDKLAKHNKD
LASSEQSKSHIAAELRKKEQQLTNDEEKFFNVCGSQDLEKDLGKVQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSEADLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERRRDEMMTLKPVRQSIVLLQEKELPDLRNRLQTVNRDIERLKGDAEEQETLLATLMS
EEETAKACQQDIGLMDRFLMDLKDVERKIAQNAAKLLGVDITRTIQQVSQEKQETQLKLD
TASSKMDLKRKLIQDQQDQIQMLKSCVNETKAEKLQLNSDMQKQQQLEEQCVDFTTEIQT
LTRDIREAKEQLSPLSFTLDKMQQEKQELMERKRQKRDEGQEKINAIKEKVKTITILDRD
INKYLEEGKDEYKEQKESQLQETNMQLHDAERHKEKISKEMANIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVEAKREALCKNIGNMKVMQLRQERREAERKMEDLKKNRSIALGRQKG
FEEELLHYKKELREDQYNKADELYKNKMIVIRTTELVIKDLDLYYKALDQAIMKFHSLKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVKRRLYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSSQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSISSLSSYLP
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaatagacaagatgagtatccttggggtgcgcagttttgggattgaggacaaa
gacaaacaagtcatctcgttcttctctccccttacggttctggttggtcccaacggagca
ggcaaaacgaccattattgagtgcctcaagtatgctacagcaggagagcttcccccaggt
tctaaaggaggtgcttttgtccatgatccaaaggacgcccacgaaacagacgtgcgagca
cagattcgacttctgttctcagatgtcaacggagagaaagtcaccatccatcgttccatg
tcctgcacccagaaagcgaagaactactcctttaaaagcttggagcaggttattacccgg
ctaaaagatggcgcaaaggtgagcttgtcatccaagtgtggtgagttggaccgtgagatg
atttccgcacttggcgtgtccaagccggtgttgaatcacgtcatattctgccaccaagag
gactccaactggccactcagtgagggcaaggcgctcaaggaaaagtttgattccattttt
gctgcaaccaagtatatcaaagctcttgacacgatgcgtcagttgcgtctcaagcagaac
aacactgtgagagagtgtcaggtggagttgcgcttcttgaagcagaacaaggaaaaagcc
cagcaaattagagaaattgttgccaacaaggaggctcagttgatggcctccaaagacaat
atccagctgattgaaagccagattgatccactagagaatcggcttgtagacattgactta
aaactgggaaaagtaatgaagctggacaatgatattaaagctttggacagcaggaagaaa
cagatggaggaagacaacaaggagttggaggaaacaatggaacaggtgttccagggttcg
actgagcagctgcaggagctgtaccagaaccaccagaagaccgtgagggagaaggaacgg
agactgaccgactgccagaaggaaatggagcgagctggcagggagtgtctgagactcaac
agggtcaaggctgatctcttggtggaacaaggacgtttacagctggaggctgaccgccac
acacaaaacatcaaaaaccgcgacactgaggtccgtttattgtcatcccaattggaggtg
gagggttacgaccgaccgcctttcacgactatacagcttgcgagctttcatcgtcacgtc
acacagagactggagcaggaaaaagacatggtcgctcaggttatgttggacctgcaagaa
aaggaggagcagaaacaacagtcaattgatgagatcagggacaagaagacgggcctggaa
agaactgtggagctgaaaagagacctgcagggaaagaagcagcaagagctcaggaatgtc
cgcactgagttggagagacttgaaggttcatccgggagaatgcaggagctcgaaaatgag
ctgggtaaagcggagcatgagctgcagagcgccctgcagatgtccaatgtagaggagcta
aaagttgaggttgtggagctccagaaagaaaaggcagagctcgaccgaacacagaggcag
ctggaccatgagatgggactcctaaatattcacacgactgtgcgcactcagatggaaatg
ctgacaaaagacaagaaagaaaaagaggagcaggtacgcaagatcaaatcgcgtcacagt
gatgatctggtgtcactgctgggccacttccccaacaaaagggagctggaggactggctc
tatgcaaagtcaaaagaaataaacagtaccagggacaaactggccaaacacaataaggac
ttagcctccagtgagcagagtaagagccacatcgctgccgagctgcgtaaaaaggagcag
cagttgacaaacgatgaagaaaagttcttcaatgtgtgcggcagtcaagatctggagaag
gacctcggtaaagttcaggaggatctggaaaaaatctccaaacaaagagccatgctcgct
ggagccactgctgtctacacccagttcataagccagctgaccgaggagagggagccttgc
tgccccgtctgccagcggacattcccgtctgaggccgacctgcaggaggtgatcagcgac
atgcagtccaaactgcgcctggttccagataagctgaaaaacaccgaacaggacctgaag
aggaaggagagaaggcgagatgagatgatgaccctaaaaccggtcaggcagtccattgtg
ctgttacaagagaaggagttgcccgacctgagaaatcgactgcagactgtgaacagagat
atcgagaggctgaaaggtgatgcagaggagcaggagactctgcttgcgacgttgatgtct
gaggaggaaacagccaaagcttgtcagcaggacatcggcctaatggacagattcctgatg
gacttaaaggatgtggagaggaaaatagctcagaatgcagccaaactcctgggtgtagac
atcaccagaaccatccagcaagtcagtcaggagaagcaggagactcaactcaaattagat
accgcatccagcaagatggatctgaaacgtaagttgatccaagaccagcaggatcagatt
cagatgctgaaaagttgtgtgaatgagaccaaagcagagaaactccagctcaacagtgac
atgcagaagcagcagcagctggaggagcagtgtgtcgatttcaccactgagattcagacc
ttaacaagggacatccgggaagcaaaggaacagctgtccccgttgtccttcaccctcgat
aagatgcagcaggagaaacaggagctgatggaacgtaaaaggcagaaacgggatgaagga
caggagaagatcaacgctattaaagagaaagtaaagaccatcaccatcttggacagggac
atcaacaagtatcttgaagagggcaaagatgaatacaaggagcaaaaagagtcacagctt
caggaaaccaacatgcagctccacgacgctgaacgacacaaagagaagatcagcaaagag
atggcaaacatccgacaggacattgacactcaaaaggtgcaggagcgttggttgcaggac
aacctgaccctaagaaaacgggttgaggagcttaaagaggttgaggctaagcgagaggcc
ctttgcaaaaacataggcaacatgaaagtgatgcaattacgccaagaacgacgtgaagcc
gaacgtaagatggaggacctgaagaagaaccgcagcattgcgctgggtcgccagaaaggc
tttgaggaagagttgctgcattacaaaaaagagctgcgagaagaccagtacaataaagca
gatgaactctacaaaaacaagatgatcgtaatacgcacgacagagctagtcatcaaagac
ctggatctttactacaaagcccttgatcaagcgatcatgaagtttcatagtctaaagatg
gatgaaatcaacaaaatcatcagagacctttggcgcagcacttatcgaggacaagacatc
gaatacgtggaaatacgctcggatgtggacgagaattcatctgccggagtaaaacgaagg
ctttacaactatcgagttgttatggtgaagggggacaccgctttggatatgaggggacgg
tgcagtgctggccagaaggtgctggcatccctcattatccgtcttgccttagcggagaca
ttctgtctgaattgtgggattttggcgctggatgagcccaccaccaacctggacagagaa
aacatcgaatccctggcacatgcccttgtcgaaatcattaagagtcgttcaagccagcgc
aacttccagctactaataatcacgcatgacgaggactttgtggagctgctggggcgctcc
agttacatcgaacacttctaccgcatccgcaagaaccaggaccagaattctgagatcacc
aagtgcagcatcagctccctctcctcctatctgccctga
DBGET
integrated database retrieval system
