Syngnathoides biaculeatus (alligator pipefish): 133491746
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Entry
133491746 CDS
T09681
Symbol
smg8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8 isoform X1
KO
K18734
protein SMG8
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133491746 (smg8)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133491746 (smg8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
DUF2794
Motif
Other DBs
NCBI-GeneID:
133491746
NCBI-ProteinID:
XP_061659285
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All DBs
Position
18:complement(11462006..11470735)
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AA seq
926 aa
AA seq
DB search
MTFYVRNMKYANMAAPVSIEGLLRAAVSEDAEHRDDGLCVVGIFGKSNMQLGALKESLVN
TLADKHVFSVFGGADEEEGGGGGGIQALYSPDNRVLYLLLSSVFDGCQLLRFCRSPSAGS
GHADAYDFWKGLERQHCLRLLYLFSVCHVLLLVHPSHTFDITYDRLFRALDALRQKVLPL
TRAAVRDCPVSKEWKVNCRPCPPRLLFVFQMNGTLKVPNGTELGIHPDKPKKHSPRRRLQ
HALEDQIYRIFRKSRVLTNQSSNCLFTVPANQAFVYVMPASDEDPVGALLSQLRSNCVLC
EHDSGAPVSGPRRYQQTRRSARQAAAEQLPPTSAGAPPADCSLKEFLWQHVELVLSKKGF
DDSVGRNPQPCHFELPSYSKWAQVALKLHQALVGGAEEEVVDLAAKVQLQLKVLDGFLDA
DAKFSENRCQKALPLAHSAYQANLPHNYTTAVHKNQLAQALRVYSQHARGVAFQRYALQL
HEDCYKFWSNGHQLCEERSLSDQHCVHKFHLLPQPGEKTDVDHNPPILNHNSRGRSTSSC
NCGRKQAPRDDPFDVQAANYDFYQVLEEKCCAKLDRINFPIFQPSTPDPAPAPASNGAQR
PPCEGEADRLKEAGAAHSHTPGDTSLSLALSLGQSTDSSSPYGDGDSAADSRVQQKRPSL
ADRQPSTVEYLPGMMHSGCPKGLLPKFSSWSLVKLGPAKSYNCHTGLEQPGFLPGASFLL
PWDLVIRSRSEDDAAEPLDGGASSWPTPNKMPAGKRGGAGCPGRSRRRDDTARAYVGFEY
EDGRGRRFISSGPDKIVKVLGPGGVKEPAGRVLNGDMPLYIPSPSQGRGVKPHFAQLVRL
FIVVPDAPLEVTLTPQVQPGPPPCPVFHPEQTDLALPPNGLWVLRFPYAYATELGPCYPP
KENQPLGNYKVLRGIVRATTTNTPPQ
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgacgttttacgtacggaacatgaaatacgcaaacatggccgctcctgtgagcatagag
gggcttctccgagcggctgtctcggaggacgctgaacaccgagacgacggtctgtgcgtg
gtgggcatcttcggcaaaagcaacatgcagcttggggccctcaaggagtctctcgtcaac
accctggcggacaagcacgtcttctcagtgttcggcggggccgacgaggaggaggggggc
ggcggcggcggcatccaggcgctgtactccccggacaaccgcgtcttgtacctcctgctc
tcctccgtcttcgacggctgccagctgctgcgcttctgccgctccccgagcgcggggagc
ggccacgccgacgcctacgacttctggaaggggctggagcgccagcactgcctccgtttg
ctctacctgttctcggtgtgtcacgtcctgctactcgtccacccgagccacacgttcgac
atcacctacgaccggctcttccgtgccttggacgccctgaggcagaaggtgctgccactc
acccgggccgccgtcagggactgcccggtgtccaaggagtggaaggtgaactgccggccg
tgcccgcctcggctcctcttcgtcttccagatgaacggaactcttaaggtccccaatgga
accgagttgggtatccatccagacaaacccaagaagcactcgccacgtcgacgcctgcag
cacgctctggaggaccaaatctatcgcatcttccgcaaaagtcgcgtgctgaccaaccag
agcagcaactgcctgttcaccgtgcctgccaaccaggccttcgtctacgtgatgcctgcc
tccgacgaggaccccgtgggtgccctgctgagccagctgcgctccaactgcgtcctgtgc
gagcacgactccggcgcgccggtgtccgggccgcggcgctatcagcagacgcggcgctcg
gcccggcaagccgcggcggagcagttgcccccgacgtcggcgggcgctccgccggccgac
tgcagcttgaaagagttcctgtggcagcacgtggaactggtgttgtccaaaaaaggcttc
gacgacagcgtgggacggaatccgcagccttgccactttgagctgccgtcttactccaag
tgggcacaggtggcgctgaagctccaccaggcgctggtgggcggcgccgaggaggaggtg
gtcgacctggcggccaaggtccagctccagctcaaggtgctggacggcttcctcgacgcc
gacgccaagttctccgagaaccggtgccagaaggcgctgccactggcccacagcgcgtac
caggccaacctgccgcataactacaccacggccgtgcacaagaaccagctggcgcaggcg
ctgcgcgtgtacagccagcatgcgcgcggcgtggccttccagcgctacgccctgcagctc
cacgaggactgctacaagttctggagcaacgggcatcagctgtgcgaggagcgcagcctc
tccgaccagcactgcgttcacaagtttcacttactgccgcagccaggagagaaaaccgat
gtggaccacaacccgcccattctgaaccacaacagcagggggcgctccacgagctcctgc
aactgcggaaggaagcaggccccccgcgacgacccttttgatgtacaggcggcaaactac
gacttttaccaggtcctggaagaaaaatgctgcgcaaagctggacaggatcaacttcccg
atcttccagccgagcactcccgaccccgcccccgccccggccagcaacggggcacagcgc
cccccgtgcgagggcgaggccgacaggctgaaggaggccggggcggcgcacagccacacg
cccggcgacaccagcctgagcctggctctgagtctgggccagtccaccgacagctcgagt
ccttacggggacggcgactcggctgccgacagccgcgtgcaacaaaagcgacccagtctg
gccgaccgccagccctccactgtggagtacctcccggggatgatgcactcgggctgcccc
aagggactcttgcccaagttctccagctggtccctggtcaaactgggtccggccaagtca
tacaactgccacacgggtctggaacagccgggcttcctccccggcgcctccttcttgctc
ccttgggacttggtgatccgcagccgttcggaggacgacgcggcggagcctctggacggg
ggcgcgtcctcgtggccgacacccaacaagatgccagcggggaagcgaggcggcgcgggc
tgcccggggaggagccggcggcgggacgacacggcgcgggcctacgtgggcttcgagtac
gaggacgggcgagggcggcgcttcatcagctcggggcccgacaagatcgtcaaggtgctg
gggccgggcggcgtcaaggagcccgccggcagggtgctcaacggcgacatgccgctctac
atcccgtcgccctcgcagggacgaggagtcaagccccacttcgctcagctggtgcgactt
tttatcgtggtacccgacgccccgcttgaggtcaccctcacccctcaggtgcagcccggt
ccgcccccgtgccccgttttccacccggagcagaccgacttggcgctgccgcccaacggc
ctttgggtgctgcgcttcccgtacgcctacgccaccgagctgggaccctgctaccccccc
aaggagaaccagcccctcggcaactacaaggtgctgcgaggaatcgtcagggccaccacg
accaacaccccccctcagtaa
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