Syngnathoides biaculeatus (alligator pipefish): 133491942
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Entry
133491942 CDS
T09681
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133491942
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sbia04515
]
133491942
Cell adhesion molecules [BR:
sbia04515
]
Immunoglobulin superfamily
ROBO family
133491942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
fn3
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Unc5_NetrinR_N
Ig_PDGFR_d4
Ig_J_second
Fn3_Dep-1_3rd
Motif
Other DBs
NCBI-GeneID:
133491942
NCBI-ProteinID:
XP_061659683
LinkDB
All DBs
Position
18:complement(10001514..10063247)
Genome browser
AA seq
1501 aa
AA seq
DB search
MMPACFKGIYYLLGVLHLCSGSRLRQEDSPPRIVEHPSDLIVSKGEPATLNCKAEGRPAP
TVEWYKDGERVETDRDNPRSHRMLLPSGSLFFLRIVHGRRSKPDDGSYVCVARNYLGQAI
SHNASLEVAILRDDFRQNPVDVMVAVGEPAVLECQPPRGHPEPTISWRKNGLNLDDREER
ITIRSGKLMITNSRKSDAGKYICVGTNMVGERESEIAELTVLERPTFLKRPSSAVVLADG
SAEFHCAVQGDPVPTVRWRKEDSELPKGRYEILEDHTLIVRQVTSSDEGSYTCVVENMVG
KSETSATLTVHVPPAFVLRPRNQVAPIGRTVTFQCEATGNPQPAIFWQREGSESLLFSAP
QPFSRVSVSQLGSLTITDVQRSDGGLYSCQALSIAGSVITKALLEVTDSGSEPPPPVIRQ
GPVNQTVPVDSTVVLSCHTAGVPPPSVHWKKDGAALSPADTRLSIAESGSLEIRYTKLGD
TGFYTCVASNPNGEASWSAHLQVEELGVVVQTSRPSGPDLLPGAPTKPEITDVSPTSVTL
SWKTSPSGGATPTSYLIEAFSYNLGSRWVTLAEHVKMQTFVVGNLKPGTVYLFLIRAVNA
YGLSDPSPISDSIRTLDISFTAEGTDPHHIQRELGDVVIHLNTPTVVSPSAVRLNWMVEK
HSLYIQGYKLLYRPSAEHGQPEGQWSALDVRAPHKDGVVIGQLRRGAIYEFKVRPFFDEF
QGADSEVKVIRTLEEAPKQAPRDVTITKVDTNGTAVLISWKPPPVPEEAGVIQDYKIWCL
GNESRYHINQSVDGYTFSLLVAGLTPRIRYGVEVAASNGAGPGVKSKTVFFQFDSAGQMM
DLSGAKDALSHISDVVKQPAFIAGIGATCWLVLMIFSVWLYRHRKKRSGLSSTYTGIRKV
PSFTFTPTVAYQRGESVCSAGRPGFLGMAEPMNPLWMPDNWPNSCANQKECGINCCNNAN
GTSDSNMTTYSRPADCIANYGKHPDNKHGSETAIYTDVNLGEKLNEIKKFNNSNLCYASP
GGDSSDAYEPIPYATTQLIQASIKNKAHTLESIDVPCWNQPPNPPPLPREMATQMHYNII
EQNVLNKDHPQVNEGLVHHKTIARNHSQDHSMGGSHYSSDRGSNSTSGSQNQKKGPRGMK
TPKHTAVSWGDALSPPHAIAWNGDEYSLPMEKSFDAERRTDGCPTPPIRGAESSSSDVSY
SHQSTTHPQGITMSNGLQDGTKHPSSTPMYKDADEQDEDAGEETAHDQNHLHLHQTQQHK
QKLPHHSPHKLLFHRLEQTPASSTGELDRSVTGSMVNSWGSASEDNLSSGRSSVVSTSDG
SFFTDGDFSQAEGLRMCRYPEESGERPSSPMSTDSNMSPAMMQKRPRKCKQNQCLQPSYH
PKDAFSDDLFMPLNFPGQLSHSDLRVRGATLPRMGSGEARGRRGSTGTHRVREAPFEEGE
SQDIHEILPRGKAGSKSKQHSGPAQSEANDSKVSIFMASEDVRIKHAVQMQSAGVDEFLR
S
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgcctgcttcaaggggatttactatctgttgggggttttgcacctttgttca
gggtctcgtcttcgccaggaagactcccctccccgcattgttgagcacccctctgacctg
attgtgtccaagggggaaccagccactctcaactgtaaggcagagggccgtccagcccct
acggtagaatggtacaaggacggggagcgtgtggagaccgaccgagacaaccctcgctcg
caccgcatgctcttgcctagcggctctctcttcttcctacgcatcgtccacggacggagg
agcaagcccgacgatggcagctacgtgtgcgtggcccgtaactacctgggccaggcaatc
agtcacaatgcatcactggaagtagccattttacgtgatgacttcagacagaacccggtg
gacgtcatggttgcagtgggcgagcctgcagtgctggagtgccagccaccgcgtggacat
cctgagcccacaatctcgtggagaaaaaatggtttgaacttagacgacagagaagaacgg
attacgatccgcagtggcaagctgatgatcaccaacagcaggaagagcgacgcaggaaaa
tacatttgtgttggaaccaacatggtcggggagcgtgagagtgaaatcgctgaactcacc
gtgcttgagcgccccaccttcctcaagcggcccagcagcgcggtggtattggcagacggg
agtgccgagttccactgtgcggttcaaggtgatcctgttcccactgttcgctggaggaaa
gaggattctgagctgccgaagggcagatatgaaattctagaagaccacactttgattgtt
cgtcaagtgacgtcttcagatgagggttcctatacatgtgtggtggagaacatggttggc
aaatcggaaacatctgccacgcttactgttcacgtgccgcctgcatttgtcttacggccc
aggaaccaggtggcaccaatcggcaggaccgtcactttccagtgtgaggccactggcaac
ccgcagcctgctatcttctggcagagggagggcagtgagagtctcttgttctcagcaccc
cagcccttcagccgagtgtctgtctcccagctgggcagtttgaccatcaccgatgttcaa
cgttccgatggcggcttgtacagctgccaggctctcagcatcgccggcagcgttattacc
aaagcattgttggaggttactgactccggctcagaaccgcctccccctgtaattagacag
ggcccggtcaatcagactgttcccgtggacagcaccgtggtgttgagttgccatacggcc
ggcgtgccacctccttcggtccactggaagaaagatggtgcggcgttgtcaccagcggac
acacgcttgtccatagcagaaagcggctcccttgagattcgctacacgaagctcggagat
acaggcttctatacttgtgtggcttccaatcccaatggagaggcctcctggtcagcacat
ctacaagtggaggagttgggggtcgtggtccagaccagccgaccttcaggccccgacctg
ttacccggggctccaactaaacccgaaataactgacgttagccccacttcggtcactctc
tcatggaaaaccagccccagtgggggggcaacacccacctcatatctcatagaggcattc
agttataatttaggcagcagatgggtgaccctggccgaacatgtgaagatgcagaccttt
gttgtggggaacctgaagccgggcaccgtttacctttttctgatcagggcagtcaacgct
tatggcctcagtgacccgagccccatctcagattccatccgaacactcgacatcagtttt
acagctgagggaacagatcctcatcacatccaaagggagttgggcgatgtggtgatccac
ctaaacacacccacggttgtgtcgccctccgcggtccgtcttaactggatggttgaaaag
cactcgctgtacatccaaggctacaagttgttgtacaggccctcggctgaacacggacaa
cctgagggtcagtggagtgcgctggacgtacgcgctccacataaggacggagtggtgatc
ggtcagctcaggagaggtgccatttatgagttcaaagtgcgtcccttttttgacgagttc
cagggagccgacagtgaagtgaaggtgatcagaacgttggaagaagcaccaaaacaagct
ccccgggacgttacaatcacaaaagttgataccaatggcactgcagtcctcatatcgtgg
aaaccgcctccagtcccggaggaggcaggagtcattcaggattacaagatctggtgtctg
ggtaatgagagtcgctaccacatcaaccagtcagtcgacggctacaccttctcgctgctt
gttgccggtctgacgccgaggattcgctacggtgtagaggtcgcggcaagcaatggtgcc
ggacctggggtcaagagcaaaacagtgttctttcagtttgactctgctggtcagatgatg
gatctcagcggggcaaaggacgccctctcgcacatttccgacgtggtgaagcagccggca
tttatcgcaggcattggcgccacctgctggttggtccttatgattttcagcgtgtggctg
tatcgtcaccgtaagaagcgaagtggcctcagcagcacgtacaccggcatccgcaaggtg
ccgtctttcacatttacaccaacagttgcatatcaaagaggagaatctgtgtgcagcgct
ggcagacctggctttctcggcatggctgaacccatgaacccgctctggatgccagacaat
tggccaaattcatgtgccaatcaaaaggagtgcggcatcaactgctgcaataatgccaac
ggcaccagtgacagtaacatgacaacatacagccgaccagccgattgcatcgctaactac
ggaaagcacccagataacaaacatggctcggagacagctatttataccgacgtgaatctc
ggcgagaagctcaatgagatcaaaaagttcaacaattccaacttgtgctatgcaagtcca
ggaggagattcatcagatgcatatgagccaatcccatatgctaccacccagcttatccag
gccagtattaaaaacaaggctcataccttggagtcaattgacgtgccctgctggaatcag
cctccaaaccctcctccgctgccaagagagatggccacacagatgcactacaacatcatt
gagcaaaatgttctaaataaagatcatccgcaagtaaatgaaggcttagtccatcacaaa
accatcgcccgcaaccatagccaagatcacagcatgggaggctcgcattacagctcagac
agggggagcaacagcacctcaggaagtcaaaatcaaaagaaaggaccacggggcatgaag
actccaaaacatactgctgttagctggggagatgctctttcgcctcctcacgctattgcc
tggaacggtgatgagtacagcctccccatggagaagagttttgatgcagaacggagaaca
gatggctgcccgactccaccaattcgaggggcagagtcatcttcctccgacgtgtcttac
agtcaccaaagtacgacacatccacagggaatcaccatgagcaacggtctgcaagatgga
accaagcaccccagctccacccccatgtacaaggacgctgacgagcaagacgaggacgca
ggggaggagacagcgcacgatcaaaaccacctccatctgcaccaaacccaacagcacaaa
caaaagttacctcaccactccccgcacaagctgctcttccacaggctggaacagaccccc
gcctccagcacgggggagctggatagatcggtcacagggtccatggttaacagctggggc
tctgcatctgaggataacttatcatcaggcaggtccagtgtcgtaagcacctcagacgga
tcattcttcacggatggagatttcagccaggcagaaggcttgcgtatgtgcagataccca
gaggagtcaggtgagcgacccagcagtcccatgtctacagacagcaacatgagtcctgca
atgatgcagaaaaggcccagaaagtgcaagcagaatcaatgtctacaaccgagctaccat
cccaaagatgccttcagtgacgacttgttcatgcctctgaatttccccggtcagttatcc
cacagcgacttgagagtaaggggggccacgttaccccggatgggttctggagaagcccgg
ggccgaagaggcagcaccgggactcaccgagtcagagaggctccatttgaagagggcgag
agccaagacatacacgagattctacccagggggaaagcaggcagcaaaagcaaacagcac
tcaggtccagctcaaagtgaggccaatgactccaaagtatccatctttatggcgtctgaa
gacgtgaggatcaaacacgcagtacaaatgcagtctgcaggagtagatgagttcctgaga
agttga
DBGET
integrated database retrieval system
