Syngnathoides biaculeatus (alligator pipefish): 133492008
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Entry
133492008 CDS
T09681
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03030
DNA replication
sbia03420
Nucleotide excision repair
sbia03430
Mismatch repair
sbia03440
Homologous recombination
sbia03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133492008
03420 Nucleotide excision repair
133492008
03430 Mismatch repair
133492008
03440 Homologous recombination
133492008
03460 Fanconi anemia pathway
133492008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbia03000
]
133492008
03032 DNA replication proteins [BR:
sbia03032
]
133492008
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133492008
Transcription factors [BR:
sbia03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133492008
DNA replication proteins [BR:
sbia03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133492008
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133492008
MMR (mismatch excision repair)
133492008
DSBR (double strand breaks repair)
HR (homologous recombination)
133492008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
DUF223
DUF5088
Motif
Other DBs
NCBI-GeneID:
133492008
NCBI-ProteinID:
XP_061659840
LinkDB
All DBs
Position
18:10666862..10684167
Genome browser
AA seq
703 aa
AA seq
DB search
MSVNLTAGAIEALFNECPVENPVLQVMNIREYPPGKQGHTRYRLKLSDGVRSLSCFLLAS
QLNHLKEAELLEPNCVCMLKKTISSYLAKKRVLVVLDMDVLQTAADVGGKIGNPAQLTDK
TADQQEAHRSTSSSDEIPGPSGYDTRSSCENSGIKSSLMKSSWKGSPVKGPGMPPPMKAS
PVKGPGMPPPMQASPVKAFGMASPVKRSGMPSPMPASPSPGPSQSPTKLTPIDDLNPYVS
NWTVRARVTNKSDVCNWSNSRGEGKLFSFEVMDESGEIRITAFNSEVDKFFSLVEQNKVY
LISKCSVKLPIKRFTSLKNDYEITLGANSRIVPCDDDHDVPTVHYDFVPISQLEAKDPES
IINVIGVCEEAGEVSLITTKAGKPLFKRALELTDASGKTVTLTLWGDKAQRFDASCHPVV
AVKGARVSAFGGRSLSAPFSSTLMVNPDIPEAFELRAWYNQVGHGLCSQSLTEVRSPNGE
FRTNWKSLSDVKTEQLGHDGKGRGECWSLSQLSTGQEAGHTLNWLPANRRAHRDKQPHPQ
SHLGAYYFSSVATVVYACKENALYRACPAGSCYKKVQERDDGRYHCDKCGKDYPVFKYRF
MLSVNLADFGDNMWATCFQETAETLLGLNAEQLGHLKDTDEDAFNEVFQKVYFSSHIFRN
RVKLEMYNDECRMRVTVMDVLPLDHRQYSRRLLNSVRALARDN
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttaaccttacggcaggggcgattgaggccctgtttaacgagtgtccggtcgaa
aatccagttctgcaagttatgaacatccgtgagtaccctcccggcaaacaagggcacacc
agataccgcctgaaactaagcgatggcgtgcgcagtttgtcctgcttcctgttggcatca
cagctgaaccacctgaaggaagcggagctactggagcccaattgcgtgtgcatgctcaag
aagaccatctcctcgtatttggccaaaaaacgggttctggtggtgttggacatggatgtg
ttgcagaccgctgcggatgtgggaggaaagatcgggaatcccgcacagttaaccgataaa
accgcagatcagcaggaggcgcaccggagcacctcaagttccgatgaaatacctggaccc
tctggatacgacacaaggagcagttgtgaaaactccggaatcaagagttccctgatgaaa
agttcttggaaaggttctcccgtgaagggtcctgggatgccaccccccatgaaggcgtcg
cccgtgaagggtcctgggatgccaccccccatgcaggcgtcgcccgtgaaggcttttggg
atggcgtcgcccgtgaagcgttccgggatgccgtcccccatgccggcgtctccctctccc
ggtccttcccagagtccaaccaaattgaccccgatagacgatctcaacccgtacgtcagc
aattggaccgtcagagcccgagtgaccaacaagtctgacgtctgcaattggagcaactcg
aggggagaggggaagctcttcagcttcgaggtcatggacgagagtggagaaatcaggatc
acggccttcaacagtgaagtggacaagtttttctccctggtggagcaaaacaaggtctat
ctgatctccaaatgctcggtgaagctgcccatcaagcggttcacgtcgctgaagaacgac
tacgagatcacgctgggcgccaactctcgtatcgtgccctgcgacgacgaccatgacgtg
cccaccgtgcactacgactttgtgcccatctcgcagttggaggccaaagaccccgaatcc
atcattaacgtgattggtgtgtgcgaggaggccggggaagtgtccctgatcaccacgaag
gccgggaaaccgctcttcaagagggcgctcgagctgaccgacgctagcgggaagacggtg
acgctcacattgtggggagacaaggctcagaggtttgacgcctcctgtcacccggtggtg
gccgtcaaaggggctcgcgtgtcggccttcggcggccgctcgctgtctgcgcccttcagc
tccacgctgatggtcaaccccgacatccccgaggcctttgagctcagagcctggtacaac
caggtaggccacggcctgtgcagtcagtccttgacggaggtccggtccccaaatggcgaa
ttcaggaccaactggaagtctctgagcgacgtcaagacagaacaactgggacatgacggg
aagggtcgcggggagtgctggagcctatcccagctctcaacagggcaggaggcggggcac
accctgaactggttgccagctaatcgcagggcacatcgagacaaacagccacacccacaa
tcacaccttggggcgtactacttcagcagcgtggcgacggttgtgtacgcctgcaaggag
aacgccctctaccgggcgtgccccgccgggtcctgctacaagaaggtccaggagcgggac
gacggacgctaccactgcgacaaatgcggcaaggactaccccgtttttaagtaccgtttc
atgctctctgtgaacttggccgactttggggacaacatgtgggccacgtgcttccaggaa
acggccgagaccttgttgggtctcaacgctgagcaactgggacacctgaaggacaccgat
gaggacgcgttcaatgaggttttccaaaaagtctacttcagctcgcacatcttcaggaac
agagtcaagctggagatgtacaacgacgaatgtcgcatgagggtgaccgtgatggacgtc
ctcccgctggaccaccggcagtacagcaggaggctcctgaacagcgtccgagcgctggcc
cgggataactga
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