Syngnathoides biaculeatus (alligator pipefish): 133492019
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Entry
133492019 CDS
T09681
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133492019 (scaf4a)
03041 Spliceosome [BR:
sbia03041
]
133492019 (scaf4a)
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133492019 (scaf4a)
Spliceosome [BR:
sbia03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
133492019 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
133492019
NCBI-ProteinID:
XP_061659863
LinkDB
All DBs
Position
18:complement(15703570..15715017)
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AA seq
956 aa
AA seq
DB search
MDAVNAFNQELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKSEYKV
AGLYVVDSIVRQSRHQFGADKDVFGPRFTKNIVGTFENLCLCPLEDRSKLVRVLNLWQKN
GVFKSNVIQPLLDMAAGTSSDAEPQAASCPPPYAEEPAPSSPPTPTKDQAAAAPSASPQK
QDPFTAVAQLFQSTQGQQLQQMLQNFQQQPVQVEPTPQAPPAPQLDTSSVPPVFSNALTH
PPQAGQQKTAFDKTLLDRFDYDDEPEAADETKDDVSQPSDSMQPPHALQPPVMSMTQDFS
LQGPLPPNGQLPSYGLMPGQGFTGMMPQMGHVLPGQPFTGSVGPPGFPGVYPPPLPHSAQ
QQQDATVEADRSSMKDGRHGQTSRSGSKSPKRRRSRSNSRTRRSRHRRSRSRSRDRRHHS
PRSRSQERRDRERERERRQKGLPPPKNETLSICSTTLWVGQLDKRTQQQDVACLLEEFGQ
IDSINMIPPRGCAYIVMIHRQDAFRALQKLSRGSYKVNQKAIKIAWALNKGIKADLKQFW
NVELGVTYVPWSKVREEQLEELKEGGMLDLDTLAPEWSTIKKALENPEELTHNGGDDSQQ
LEEPHGLAPLPPPQLPPMLGMGSVPPPGFPTPMGMPPPAFPPGMPPPPFIRPGFNPMQMP
PGFPPPGAMPLSMPPPSKGEDMPLVPRKHDELPDAPNFFNNQMGAMCNQVGIPPGGSIQA
PTGGLMGTRPGLMPMQRLPGPPLLHAQRFPPPPVPPPMVPRGPHPPPLMHHDAPPPKGTF
AMPHSMRPPFPPHGPSPQGPPMPPFIRPGAPRAVEDEEGRPFRGERPGFRERDREPERER
GFSSAVRRPFGGDRSDARDRVDGSGWDRDRRDRGEWENGSREAQEKGKEGERPKRRERTT
RWDRNDRLTELENMDKLRTSEGSAEAPQKTAESAPPSAESPGGPPQPVEAKQEAVS
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaatcaggagttattctccttgatggacagtaagccgcca
atatctcgtgccaagatgatctccatcaccaagtcggccattaaagctatgaaactctac
aagcatgtggtccagattgtggagaaattcattaaaaagtgtaagtctgagtacaaggtg
gcgggcctgtacgtggtggattccatcgtccgccagtccaggcaccagtttggcgctgac
aaggatgtgtttggaccccgcttcacgaaaaacattgtgggcacctttgagaacctctgc
ctctgccccctggaggacagaagtaagctggtacgtgtcctgaacctgtggcaaaagaat
ggcgtattcaagagcaacgtcattcagcccctcctggacatggccgccggcaccagcagc
gacgcggagcctcaggccgccagctgccctccgccttacgccgaagagcctgcaccttcc
tccccgccgacccccaccaaagaccaggcagccgcggcgcccagtgcgtcaccacaaaag
caggaccccttcaccgccgtggcacagctcttccagtccacgcagggtcaacagctccag
cagatgcttcagaacttccagcagcagcctgtccaagtagaacccacccctcaggcgcca
cctgccccccaattggacacctcaagcgtccctcccgttttcagcaacgccctcacgcat
cctcctcaggccggccaacagaagactgcatttgacaagacattattggatcgttttgac
tacgacgatgaacctgaagccgcagacgagaccaaggacgacgtctcgcagccctctgac
agtatgcagccgcctcacgccttgcagccgcctgtgatgagcatgactcaggacttctcg
ctgcagggtcctctccctcctaacggccagcttccgtcctatgggctgatgcccggacaa
ggattcacaggaatgatgcctcagatggggcacgttctaccgggccagcccttcactggt
tccgtgggacctcctggcttcccgggggtttatcctcctccacttcctcactcggcccag
caacagcaggatgcaacagttgaagcagatcggtcctccatgaaagatggcagacacggt
caaacgtcacgatcaggctccaagtccccgaaaaggaggcgatcgcgctccaattcccgc
acgcgccgttcccgtcaccggcgttctcggtcgcgctcccgggaccgacgccaccattcc
ccgcgctctcgctcgcaggaacgccgtgacagggaacgtgaacgggagcggcggcaaaaa
ggtctcccgcctcccaaaaatgagactctgagcatctgcagtacaactctgtgggtgggc
caactggacaagaggactcagcagcaagatgtggcctgtttgctggaggagtttggacag
atcgactcaatcaacatgattcctccgcgaggctgtgcctacatcgtcatgatccaccga
caggatgccttcagggccctgcagaagctcagtcgaggctcctacaaagtcaaccaaaaa
gccatcaagatagcatgggctctgaacaaaggcatcaaggccgatttaaagcagttctgg
aacgtggagcttggtgtcacctatgttccctggtccaaagtcagggaggagcagctggag
gaactcaaggaaggaggaatgctggatttggacactttagcgccagagtggagcactata
aagaaagctctggagaacccagaggagctcacccacaacggtggagacgattcacagcag
cttgaggagccccatgggttggctccacttcctcctccacagcttcctccgatgctcggc
atgggttctgtgccaccacctggtttccccactcctatgggcatgccgcctcccgccttc
ccgccgggcatgcccccaccaccattcattagaccgggcttcaaccccatgcagatgcct
ccaggtttccccccaccaggtgccatgcctctctccatgccgccgccctccaaaggtgaa
gacatgcctttggtccccaggaaacatgatgagctcccggacgctccaaacttcttcaac
aaccagatgggagctatgtgtaaccaggtgggcatccccccaggtggcagcatccaggcc
ccaacgggtggtctgatgggaacccggcccggtttgatgccgatgcagcgcctcccgggc
cctccgctgctgcacgcacagcgtttcccaccgccgcccgtcccgcctccgatggtgccc
agggggccccatcctccacccctgatgcaccacgacgcccctccacccaaaggaaccttt
gcgatgccccacagcatgagaccgcccttcccaccccatgggccatctcctcaaggtcct
cccatgcctccttttatcagacccggcgccccacgtgcagttgaggacgaggagggacgc
cctttccggggtgaacgcccaggattcagggagcgcgaccgggagccggagagagagcga
ggattcagcagcgcggtgaggcgcccgtttggcggtgatcgctcagatgcgagggacaga
gtggatgggagcggatgggacagagacaggcgggacaggggtgagtgggaaaatggcagc
agggaggcccaggaaaaagggaaagaaggagagcggcccaagcggcgggagaggaccacc
cgttgggaccgcaacgatcgcttgaccgagctcgagaacatggacaagcttcgcacctct
gagggcagcgccgaagcgccccaaaagactgccgagtcggcccctccctctgccgagtct
cccggagggccgccgcaacccgtagaagccaaacaggaagctgtgtcgtag
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