Syngnathoides biaculeatus (alligator pipefish): 133492471
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Entry
133492471 CDS
T09681
Symbol
rnf6
Name
(RefSeq) E3 ubiquitin-protein ligase RNF6 isoform X1
KO
K22753
E3 ubiquitin-protein ligase RNF6 [EC:
2.3.2.27
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbia04121
]
133492471 (rnf6)
Enzymes [BR:
sbia01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133492471 (rnf6)
Ubiquitin system [BR:
sbia04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133492471 (rnf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_4
zf-RING-like
zf-RING_16
zf-P11
Motif
Other DBs
NCBI-GeneID:
133492471
NCBI-ProteinID:
XP_061660680
LinkDB
All DBs
Position
19:complement(13431204..13436956)
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AA seq
719 aa
AA seq
DB search
MTPLSSCLPALFMVMDPPGGGDERRRQAERLRREEAYYHFINDLSEEEYRLMRDSNLLGT
PGEVTAEELQQRLDGAKERESSQPGAEQRTPAAEPLEQQGGSVEERGAGGRRGAGNAESA
ADASNGDSLLEWLNTFRRTGNATRSGQSGNQTWRAVSRTNPNSGEFRFSLEININHDQPE
GGEHADALDSGEPPVASLGLASPPGRVASSAAARLSSAARPSPYPTPRPALSRRMQTRRT
RSSSTLSATPPVPAAVAPPAQRRGDAMHILVPSPTVSNPDQSTPPHPAANAELEQSRDNV
TLSLDCPRVSPQPGSQAPAAGQESRRTRSRGRWRRVAAAWNGNVPARASRRSRSPLHRSP
VGASASTSAISGSSIHIVDAGTSSVSMETGEAAGEPAATATEPTPESGDGESHSSGAGGS
SSVRRHPTIMLDLQVRRIRPGENRDRDSIASRTRSRARVAENTVTFESDSGGFRRTISRS
ERAGIRTYVSTIRIPLRRISETGLGEPNSTALRSILRQIMTGFGELSSLMETEADSESAV
PGHVDVGVTNTNAGPAARSHGSEYTAAQAGSGGQDQESAGPGGNEEEQVGQARLGGGPAN
AAEGRPTSRDTNNLVENGTLPILRLAQFFLLNDEDDDEHPRGLTKEQIDNLATRSYGQAS
LEGEAGRACSVCINEYAQGNKLRRLPCSHEFHIHCIDRWLSENNTCPICRQPILTTHHD
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgctgtcttcgtgtttaccagcactgttcatggtgatggaccctcctggcggg
ggagacgagcgtcggagacaggccgagcgtcttcggagggaggaggcctactatcatttt
attaatgacctaagtgaagaggagtatcgcctcatgagagacagcaacctgttggggacc
cccggagaagtgacagccgaagagctccagcaacgactggacggagccaaggagcgcgag
tcgtcccagcccggcgcggagcagcgcacgccagccgccgagcccctggagcagcagggc
gggagcgtagaagaaagaggcgccggagggaggcgaggagcagggaacgcagagtcagcg
gcggacgcgtccaacggcgactcgttgctcgagtggctgaacactttccgccgcaccggc
aacgccacccgcagcgggcagagcggcaaccagacgtggcgcgccgtcagccggaccaac
ccgaacagcggcgagttccgcttcagcctggagattaacatcaaccacgaccagcccgag
ggcggggagcacgccgacgctttggactcaggcgagccgcccgtcgccagtttgggtttg
gcgtcgccgccgggccgcgtcgcttcttccgccgccgctcgcctgtccagcgccgccagg
ccgtcaccttaccccacgcctcggcccgccctcagcaggaggatgcagactcgccgcaca
cgcagcagcagcaccctctccgcgacccccccggttcctgccgctgttgccccccctgct
caaaggagaggagatgcaatgcacattttagtaccatctcctactgtttccaatccggat
cagtccacaccgccgcatccagccgccaatgcagaactggagcaaagccgcgacaacgtg
actttatcgctagattgtccccgtgtgtcgccccagccggggtctcaagcccccgcggcg
ggacaggaatcacgtcggactcgatcgcgcggccgctggcgccgagtggcggcggcgtgg
aacggcaacgtcccggcccgcgcatccaggcgaagtcggtcccccttgcacagaagcccc
gtgggcgcgtcggcgtcaaccagcgccatcagcggctcgagcatccatattgtcgatgcg
ggcaccagctcggtttccatggagacgggcgaggcggcgggagaacccgcagccaccgcg
acggagccgaccccagaaagcggtgacggcgaatcgcattcatccggggcgggaggttcg
tcttcggtccgccgccaccccaccatcatgctggacctgcaggtgagacggattcgacct
ggagaaaaccgggaccgcgacagcatcgccagcaggacgcgctcccgggcccgcgttgcg
gagaacacggtcacgttcgagagcgacagcggcggcttccggcgcaccatctcccgctcg
gaacgggccgggatccgcacctacgtgagcaccattcggatcccgctgcggcgcatcagc
gagacgggcctgggcgagcccaactccacggcgctgcgctccatcctgcgccagatcatg
accgggtttggggagctcagctctctcatggagacggaggccgattccgaaagcgcggtc
cccggccacgtggacgtcggcgttacgaatacgaacgccggcccggctgctcgctcgcac
ggcagcgagtatacggcggctcaggccggctcaggcgggcaggatcaagagagcgcgggg
ccgggggggaacgaggaggaacaggtcggtcaggccaggctcggcggaggtccggcgaac
gccgcggaggggcggcccaccagcagggacacaaacaacctggtggaaaacggcaccctg
cccatcctccggctggcgcagttcttcctgctgaacgacgaggacgacgacgagcacccg
cggggcctcaccaaagagcagattgacaatttggccacgcgctcgtacggccaggccagc
ctggagggcgaggcgggccgggcgtgcagcgtctgcatcaacgagtacgcgcagggcaac
aagctgcggcgcctgccctgctcgcacgagttccacatccactgcatcgaccgctggctc
tcggagaacaacacctgccccatctgcaggcagcccatcctcacaacgcaccacgactga
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