Syngnathoides biaculeatus (alligator pipefish): 133492648
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Entry
133492648 CDS
T09681
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133492648 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
133492648 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133492648 (lsm5)
03041 Spliceosome [BR:
sbia03041
]
133492648 (lsm5)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133492648 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
133492648 (lsm5)
Spliceosome [BR:
sbia03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133492648 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
133492648
NCBI-ProteinID:
XP_061661117
LinkDB
All DBs
Position
19:complement(15810863..15812462)
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AA seq
91 aa
AA seq
DB search
MAATQATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaactcaagctacgaatccttcacaattgctccctttggagctggtggacaag
tgcatcggttctcgcatccacatcgtcatgaagacggacaaagaaatcgtcggcacgctg
ctgggcttcgatgactttgtcaacatggtcttggaggacgtgacggagtttgaaatcaca
ccagagggtcgtaggatcaccaagctggaccagatcctactcaacggcaacaacatcacc
atgctcatcccgggtggggaaggcccggaagtttaa
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integrated database retrieval system
