Syngnathoides biaculeatus (alligator pipefish): 133492900
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Entry
133492900 CDS
T09681
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sbia04040
]
133492900 (trpc1)
Ion channels [BR:
sbia04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133492900 (trpc1)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
DUF249
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
133492900
NCBI-ProteinID:
XP_061661698
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All DBs
Position
19:12301586..12372744
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AA seq
796 aa
AA seq
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MHISVWPCSLSVVMAALYQGTDASSPDKFLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEENRQGELNINSVDVLGRDAVTIAIENENLDILQLLLEHGCQATDALLVAIDSEV
VGAVDILLNHRPRRASKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELST
DLKELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSNEDPVDKRGLLE
ERMNLSRLKLAIKYNQKEFVSQSNCQQFLNTVWFGETASYRRKHTCLKIATVLSVAMLWP
LLSVCYLLVPRSRVGQIIHTPFVKFIIHSASYFTFLLLLNLYSLVYNEGKKNTMGPTLEM
IDYLLILWIIGMVWSDVKRLWYEGLEDFLDESRNQLSFVMNSLYLATFALKIVANSKFKN
VEDTERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKF
LGLFLLVLFSFTIGLTQLYGKDQKDPEKSPPSDCQGIFCQQQSNDAFHTFMGTCYALFWY
IFSLAHVALFVTRISYTEELRSFVGALIIGTYNIVVVIVLTKLLVAMLHKSFRQIANHED
KEWKFARAKLWLSYFDDKCTMPPPFNILPSPKTVCYLLTSMSKWVCSHTSKGRVKRQNSL
KEWKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMRD
LLGFRTSKYAMFYPRS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgtttggccctgctcgctctccgtcgttatggccgctctgtaccagggc
acggatgcctcctccccggataaattcctcgccctgaaagacgtcagggaggtgaaggag
gagaccacgctggatgaaaaactcttcttgctggcctgcgagaaaggtgactactacatg
gtgaagaagctgctggaggagaaccggcagggcgagctcaacatcaacagcgtggacgtg
ctgggccgcgacgccgtcaccatcgctatcgagaacgagaacctcgacatcctgcagctc
ctcctcgagcatggctgccaggctaccgacgcgctcctggtggccatagactcggaggtg
gtgggagctgtggacatcctcctcaatcacagaccccgacgtgcatccaagccctccatc
gccaaactgatgcagcggatccagaacccggagtattccaccaccatggacgtcgctccc
gtcatcctggcggcgcacaggaacaactacgagatcctgaccatgctgctgaagcaggac
atctcgctgccgcggccgcacgccgtcggctgcgagtgtacgctctgcaacgccaagaac
aagaaggacagtttgaggcactccaggttccgcctggacatctaccgatgcctggccagc
ccttcgctcatcatgctgaccgaggaagaccccatcctcagggccttcgagctgagcacg
gatctcaaggagctcagcctggtggaggtcgagttcaggaacgactacgaggagctggcc
aagcagtgcaagatgttcgcaaaggacctgctggctcaggcgcgcaactccagggagctg
gaggtcatcctcaaccacacatccaacgaggatcccgtggacaagcgggggctcctggag
gagcgcatgaacctcagccgcctcaaactggccatcaagtacaaccagaaggagttcgtg
tcgcagtccaactgccagcagttcctcaacacggtgtggttcggcgagacggccagctac
cggcgcaagcacacctgcctgaagatcgccacggtgctgagcgtggccatgctgtggccg
ctgctgtccgtgtgctacctgctggtgccgcgctcccgtgtgggccagatcatccacacg
cccttcgtcaagttcatcatccacagcgcttcctacttcaccttccttctgctgctcaac
ctctactcgctggtctacaacgagggcaagaagaacaccatgggccctaccttggagatg
atagactatctgctgattctctggatcataggaatggtgtggtcggatgtcaagcgtctg
tggtacgagggcctggaagacttcctggatgagtccaggaaccagctgagcttcgtgatg
aactccctttacttggccaccttcgccctcaagatagtcgcgaacagcaagttcaagaat
gtggaggacaccgagaggaagaactgggacgccttccatcccatcctggtggccgagggc
ctgttcgccttcgccaacgtcctcagctacctgcgcctcttcttcatgtacaccaccagc
tccatcctggggccgctgcagatctccatgggtcagatgctgcaggagttcggcaagttt
ctgggcctcttcctgctcgtcttgttctccttcaccatcggactcacccaactctacggc
aaggaccagaaagacccggagaagagcccgcccagcgattgccagggtattttctgtcag
cagcagagcaacgatgcgtttcacacgtttatgggcacctgctacgccctcttctggtac
atcttctcgctggctcacgtggcgctctttgtcacccgcatcagctacaccgaggaactg
cgctcctttgtgggcgccctgattataggcacttacaacatcgtggttgtcatcgtgctg
accaagctcctggtggccatgctccataaaagcttcagacaaattgctaatcacgaggac
aaggagtggaagtttgcccgggccaaactgtggctgagctactttgacgacaagtgcacg
atgccgcccccgttcaacatcctgccctcgcccaagaccgtctgctacctgctcaccagc
atgagcaagtgggtctgctcgcacacctccaagggacgagtcaagagacagaacagcctc
aaggagtggaagaacctgaagcaaaagcgcgacgagaactaccagaagatcatgtgctgc
ctggtgcaccgctacctgacgtccacgcggcagaagatgcagagcacggaccaggccacc
gtggagaacctcaacgacctgcgccaggacctgtccaagttccgcaacgagatgcgggac
ctgttgggtttccgtacctccaaatacgccatgttctaccccaggagctag
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