Syngnathoides biaculeatus (alligator pipefish): 133493005
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Entry
133493005 CDS
T09681
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133493005 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbia03032
]
133493005 (topbp1)
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133493005 (topbp1)
DNA replication proteins [BR:
sbia03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
133493005 (topbp1)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
133493005 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
133493005
NCBI-ProteinID:
XP_061661892
LinkDB
All DBs
Position
19:15577862..15588737
Genome browser
AA seq
1527 aa
AA seq
DB search
MRLHTMSKEEKEGFIVKFVESKGQTSVYADQAYQAITELQSEKYLKKIDEEAVLNMDQKD
KSLFIFSDFDTPAFQHCKNLGCRIVSPLVVVFCLQQQRCVPKAENPVYNMAMADITVSCT
SLDKTTRSEVMNLVELMGGRVYLDLNVSVTHLIAGEVGSKKYLVAANLGIPILLPSWVKA
CWESSQNSLFRYTELPRDEHLCPVLQGCTVCVTGISSTERKEVQRLCEQHGASYTGQLKM
NECTHLIVNEPTGQKYECARKWNVYCVSLHWLFDSIEKGSCQDESRYAVGTRASKSRPNT
STPTGSGTKEEGPSLLGLSNIPVNASVTVSDPTLTNGSISRMETLDAIESLDLSVCPADD
LLDGCKLYLCGLPARKLDKLRRLVNTAGGLHFNQHNEELTHVVVGEPDQDLKTFLSRATH
RPHVVTVQWLLDSFSQGRLLPEEDFLHRLLPAPAEVLSAPVRRKPAPRPSVSPPAASPST
PKLKQAEEDILLQYLDDDPTVIDVLPAGEIDRKSISVPAEQSWTLNHGAGPETDSTMQEA
SEAGLFAGKRFLLLGFGAEAEAQLVLLVTENRGRVLGSRTRAVADYAVVPLLGCSVEATV
DEVVTDTWLAMCVERECLLEPSSNPLFTPVPVMDGHFPLKDCVLSVSQFTGAERESLVEL
AQHLGANVQDYFVRLANPKKGMLASTHLVLQSPDGTKYQAAKKWGLPAVTVHWITASART
GKRAAEERFLVDLPPSPDPEEESFVCASQRTSMPGPSQMARSSPDVPLLGFQSGKAVTPL
DLGRFRSKMFRSILEDMKAKKVAGAPNRSQVVGGGKNQLVEGPSLDLDTPSKFLTKGQLF
WPKFEIKEALEAVEAMETPVGRSKPAEKAETPLTDLVERNLKVALANSTRGFDVNQMQAL
SASPELSTTRKEGVQKETGLLTGVVICVGKKLNKMQNELNAVAASLGAEFRTACDDTVTH
YIYQGRVGDNSREYRGVKERGLHVVSQHWLEACGQEQRHVPESLYPFTYNPKMSLNLSQI
PSVGPRDTELKAVEDASTTGCTSNERDDLADKNDVSETLEMRENLQRALKEIMSATMKTT
ARRTSVRLSRKGSAGADAAPNTPGGSRRTLEALRVSHPAALDINTEPSQSEQIVWDDPTA
REERAKLADNLQWPGSPSQHSESQAPPPQTAARQAAQLKDSMTDSQLVEMAGCDVINQQI
GKKASAPAREEPQNDILTPEAPSIAFPLAKPLVAPEPEEAREEVKTPPRFQLSSLSPQER
IDYSHLIEELGGVVLDKQSFDPSCSHIIVGTPLRNEKYLAAMAAGKWILHRSYLEACRSV
GRFIPEEDYEWGSSSILDALPSLTLQQRRLALAAQRWRKALRGPTEQDGQGAFSGWTVML
NIDQSRESGFRRLLQSGGAEVCVLASWPLQLDLIHLQQMLFLLLLLFFFLQVLPSGSPSM
YKVATHLFADFSRLRLGDFRADVSEASAQNVMCLKPEYIADYLMQEPIPPAALYLLTESP
PEAAPGTSSLKRKATERTSRLKKSRLH
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgaggttacacacaatgtctaaagaagaaaaggaaggctttattgtcaagtttgttgaa
agtaaaggacagacttcagtgtatgctgaccaagcttaccaggctattacagagctgcag
tcagaaaagtacctcaaaaagattgatgaagaagctgtattgaacatggaccagaaggac
aagtccctgtttattttcagtgactttgacactcctgccttccagcactgcaagaacctc
ggctgccggatcgtgagtccgctggtggtggtgttctgcctgcagcagcagcgttgtgta
cccaaagcggagaacccggtgtacaacatggccatggccgacatcactgtctcctgcaca
agcttggataaaacgactcggtccgaggtgatgaatttggtggagctgatgggcgggcgt
gtctatctggacctcaacgtgtccgtcacccacctgattgccggcgaggtggggagtaaa
aagtacctggtggccgccaacctgggcatacccatcctgctcccttcctgggtcaaagcc
tgctgggagagttcacaaaacagcctcttcaggtacacagagctgcccagggatgagcac
ctgtgcccggtgctgcagggctgcaccgtgtgcgtgacgggaatctccagcaccgagcgc
aaagaagtgcagcgtctgtgcgagcagcacggcgccagctacacgggccagctgaaaatg
aacgagtgcacccacctcatcgtcaacgaacccacaggtcagaagtacgagtgtgcgcgc
aaatggaacgtttactgcgtgtccctgcactggctcttcgacagcatcgagaagggctcc
tgtcaagacgagtctcgctacgccgtggggacccgggcctccaaaagccggccaaacacg
tccacgcccaccggctccggcacgaaggaagagggtccttctctgctgggtttgagtaac
atccctgtcaacgccagcgtgacagttagcgacccgaccctaacgaacggatccatcagc
cggatggaaacgctggacgccattgaaagtctggatctgagcgtgtgccccgcggacgac
ctcctggacggctgtaagctttatctctgcggcctgccggcgaggaagctggacaagctg
cgtcgcctggtgaacaccgcagggggtcttcacttcaaccagcataacgaggagctcacg
cacgtggtcgtcggggaaccggaccaggacctcaagacttttctgtccagagcaactcac
agacctcatgtggtgacagtccagtggctgctggacagcttctcccaaggccgcctcctc
ccagaagaagacttcctccaccgtctgcttcccgctcccgccgaggtgttgtcggcgccg
gtccgtcgcaaacccgcccccaggccctcggtcagcccccccgccgccagtcccagcacg
ccgaaactcaagcaagcggaggaggacatcctcttgcagtacctggatgatgacccgaca
gtcattgatgtgctgccagcaggtgagattgacaggaagtccatcagcgtgcccgccgaa
cagtcctggaccctcaaccacggggccggacctgagacggactccacaatgcaggaggcc
agcgaggcgggtctctttgccggcaaacgattcctcttgctgggcttcggcgccgaggcg
gaggctcaacttgtcctgttggtgacggagaacagaggtcgggtgctggggagccgcacg
cgtgctgttgccgattatgccgtggtgcctcttttgggctgttctgtggaggccacggtg
gacgaggtggtcactgatacgtggctggccatgtgcgtggagagggagtgtctcctggag
ccttcctccaatcctctcttcactcccgttcccgtgatggacggacatttccctctcaag
gattgcgtcctttctgtcagccagttcactggagctgagcgggagtctttggtggagctt
gcccagcacctgggagccaatgtccaggactactttgtgcgcttggccaaccccaagaaa
ggaatgctggccagcactcacctggtgctgcagagccccgacggcacaaagtaccaggcg
gccaagaagtgggggctgccggcagtcaccgtgcactggatcacggcgtcggcgaggacc
ggcaagagggcggccgaggagcgcttcttggttgaccttccgccttctcctgatccggag
gaagagagttttgtctgcgcctcccagaggacgtccatgccgggaccatcccaaatggcg
cgttcttccccggacgtcccgctgctcggttttcagagcggcaaggcggtcacgccgctg
gatttgggacggttccggagcaaaatgttccgctcgatcttggaagacatgaaagcaaaa
aaggtcgccggcgcacccaaccgaagccaggtggtcggaggcggcaagaaccaactcgtc
gaggggccctcgctggacctggacacgccgtccaagttcctaaccaagggtcagctcttc
tggcccaagtttgagatcaaggaggcattagaggcagtggaggcaatggaaactccagtt
gggaggtccaagcctgcggagaaggcggagacgccgctgacggacctcgttgagaggaac
ctgaaggtggcgctggccaacagcacccgcggcttcgatgtcaaccagatgcaggccctc
tctgccagccccgagctcagcaccaccaggaaggagggggtacaaaaggagaccggcctg
ctaactggtgttgtgatctgcgtgggcaagaagctgaacaagatgcaaaacgaactgaac
gccgtggccgcctctctcggggcagaattcagaacggcctgcgacgataccgtcacccac
tacatctaccaaggccgagtgggcgacaacagtcgcgaatatcgcggagtgaaggagagg
gggctgcacgtggtctcgcagcactggttggaagcttgcggccaggagcaaaggcacgtc
ccggagtctctctatccatttacctacaaccccaagatgagcctgaacctcagtcagatt
cccagcgtgggcccaagagatactgagctcaaggctgtagaagacgcttccaccactggc
tgcacgagcaacgagcgagatgaccttgcagacaagaacgatgtttctgagacgctggag
atgagagagaacctgcaaagagcgctcaaagagatcatgtcggccaccatgaagacgacc
gccaggcggacgtcggtgcgactcagtcggaaggggtccgccggcgccgacgcagccccc
aacactcctggcggcagcaggcgcacgctggaagcgttaagggtctcccacccagctgct
ttggatatcaacacggagccctcccagagcgagcagatcgtttgggacgatccgacggcc
agggaagagagggccaagctggccgacaacctgcagtggcccggtagtccttcgcagcac
tcggagtcccaggcgccgccgccgcagaccgcggcacgccaggctgcgcagctcaaagac
tccatgaccgactcgcagctggtggagatggcgggttgcgatgtcatcaaccagcaaatt
ggcaagaaggcctcagctcccgcccgggaggagccacagaatgacatcctgacccccgaa
gcccccagcatcgccttcccactcgcaaaacccttggttgctccagagccagaggaggcg
agggaagaagtgaagactccgcccagattccagctgtcctccctcagtcctcaggaacgc
attgattacagtcacctcattgaagagcttggtggggtcgttctagacaagcagtcgttt
gaccccagctgctcccacatcatcgtaggcacacccctgcgcaacgaaaaatacctggca
gctatggcggccggcaagtggatcctgcatcgctcgtacctggaggcctgccgctccgtg
ggccgcttcataccggaggaggactacgagtggggcagcagctccatcttggacgcgttg
ccctccctcactttgcagcagaggcgcttagcattagctgcccagcgctggaggaaagcc
ttgcgaggacccacggaacaggacggacagggagccttcagcggatggacggtgatgttg
aacatcgaccagagccgagaatccggcttcaggcggttgctgcagtcgggcggggccgag
gtctgcgttctagcatcatggccactgcaactcgacttgatacatttacagcaaatgttg
tttttgttgttgttgttgttttttttcctccaggtgctgccgagcggctcgccttcaatg
tacaaggtggccacgcacctgttcgccgacttcagccgcctccggctgggcgacttccgc
gcggacgtgtcggaggcctccgcccaaaacgtgatgtgcctgaagcccgagtacatcgcc
gactacctgatgcaggagcccatccctcccgcggcgctctacctcctcactgagagcccc
cccgaagcggctcccggcacgtcgtcgcttaaacgcaaagcgacggagcgcacctcccgg
ctgaaaaagtctcgtctgcactga
DBGET
integrated database retrieval system
