Syngnathoides biaculeatus (alligator pipefish): 133493535
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Entry
133493535 CDS
T09681
Symbol
mkrn1
Name
(RefSeq) probable E3 ubiquitin-protein ligase makorin-1 isoform X1
KO
K15687
E3 ubiquitin-protein ligase makorin [EC:
2.3.2.27
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbia04121
]
133493535 (mkrn1)
Enzymes [BR:
sbia01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133493535 (mkrn1)
Ubiquitin system [BR:
sbia04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133493535 (mkrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MKRN1_C
zf-CCCH_4
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_DUS3L
zf-CCCH_3
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-CCCH_PARP12
zf-rbx1
zf-RING_5
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
133493535
NCBI-ProteinID:
XP_061662948
LinkDB
All DBs
Position
20:10943690..10955639
Genome browser
AA seq
425 aa
AA seq
DB search
MAEAAAASTAASAISGGWTKHVTCRYFLHGLCKEGDNCRYSHNLTNSKPAAAMLCKFYQK
GNCAFGERCRFEHHSPSQDELPTPEPLPSTSRASQPDPELSGPTPGLGAQDWVNAAEFVP
GQPYCGRAELANAPSSVPLIEELDSGGKEPQKQLCPYAAVGECRYGLNCVYLHGDVCDMC
GLQVLHPTDLNQRSEHTKACIEAHEKDMEISFAVQRSKDMMCGVCMEVVFEKSNPSERRF
GILSNCSHCYCLKCIRRWRSARQFESRIIKSCPECRITSNFVIPSEFWVEDKEEKQKLIQ
TYKEGMGGKPCRYFDEGRGTCPFGSNCFYKHAFPDGRLEEVQPPRRQTGSSIRNRSTPHT
QLWDILGERESGDSFDNDDEEMVTFELSEMLLMLLAAGTDEEVTDSEDEWDLFHEELDDI
YEIYL
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcagctgcagcgtccacagcggcctcagcgatatcaggaggttggaccaaa
cacgtaacttgcaggtattttttgcacggtctatgcaaagaaggcgacaactgtcgatat
tctcacaatctgaccaacagcaagccggctgcagccatgctttgcaagttctaccagaag
ggaaactgcgccttcggggagcggtgcaggttcgagcaccacagtccgtcacaagatgag
ctgccgacacctgagccgttgccttccacctcccgagccagccagcccgatccggagctc
agtgggccgactcctggcctaggggcacaagattgggtcaacgccgcggaatttgtgccg
gggcagccgtactgtgggcgcgcggagttggcgaacgcgccaagctccgtccccctcatc
gaggagttggacagcggcggcaaagagccacagaagcagctgtgtccgtacgccgccgtg
ggcgagtgccgctacggcctcaactgcgtctacctccacggcgacgtgtgcgacatgtgc
ggcctccaggtgctgcaccccaccgacctcaaccagcgctcggagcacaccaaggcatgc
atcgaggcccacgagaaagacatggagatctcgttcgccgtccagcgcagcaaggacatg
atgtgcggcgtgtgcatggaggtggtgttcgagaaaagcaacccgagcgagcgccgcttc
ggcatcctctccaactgcagccactgctactgcctaaagtgcatccgtaggtggcggagc
gcccggcagtttgagagcagaatcatcaaatcttgcccagaatgtcgaatcacatccaac
tttgtcatcccgagcgagttctgggtggaagacaaggaggaaaagcagaaactcatccag
acgtacaaggaaggcatggggggtaaaccgtgtcgatacttcgacgagggccgcggaacg
tgtcctttcggctccaactgcttctacaagcacgcttttcctgacgggcgtctggaggag
gttcagcctccgcggcggcagaccgggtccagcatcagaaaccggagcacaccacacacg
caactctgggacatcctgggcgagcgagaaagcggcgactcgttcgacaacgacgacgag
gagatggtcacgttcgagctgagcgagatgctcctcatgctgctcgccgccggcaccgac
gaggaggtgaccgactccgaggacgagtgggacttgtttcacgaggaattagatgatatt
tacgaaatttacctatag
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integrated database retrieval system
