Syngnathoides biaculeatus (alligator pipefish): 133494405
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Entry
133494405 CDS
T09681
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133494405
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133494405
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
133494405
NCBI-ProteinID:
XP_061664186
LinkDB
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Position
21:complement(5808036..5867875)
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AA seq
532 aa
AA seq
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MVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVP
GLPGEQGSPGETGPVGPEGPPGLKGSLGPPGTPGVDGLKGDLGVPGLDGIPGAKGEMGEQ
GEKGDMGEEGPKGEIGEKGDAGSSAAGIKGEPGEPGRSGHKGEPGLPGLPGLPGIKGEPG
FLGPQGEPGLPGLPGTKGERGEHGAPGKGERGEVGPVGAKGSQGEAGTPGPKGSKGETGD
KGDYGPAGPKGPSGQKGDPGATEIIDYNGNIQEALQRITTVTVTGPPGPPGPVGPHGIKG
DRGLPGLPGLDGERGYKGSKGDMGMPGASGDKGATGLPGLPGVNGVKGDKGDSGLPGPQG
SSIIGPPGAPGPHGPPGPMGPHGFPGPKGEPGLHGTKGARGEPGHKGDRGPLGLPGASGL
DGKPGIRGTDGPAGPAGPAGPKGDRGERGAAGDPGPRGPYGLPGAAGTPGLDGLPGLTGE
KGDVGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggtcttccctaagatcaatcacggctttctttccgctgaccagcagctcataaagcgg
cgcctcattaagggagatcaggggcaagccggaccacccgggcctcccgggcccccaggt
cctcctgggccgcgggggccaccgggggacacgggcaaggatgggccgaggggcgtaccg
ggccttccgggtgagcaaggcagtccaggagaaaccggacccgtgggacctgagggacct
ccaggactcaagggttcgctggggcctcctggtactccaggcgttgacggactgaagggg
gatcttggcgtcccgggactggacggcatccccggagccaagggtgaaatgggagagcaa
ggtgaaaagggcgatatgggtgaggaaggaccaaaaggcgaaattggggagaagggagat
gcaggctcctctgcagcaggcatcaagggcgaacccggagagcccggaagaagcggacac
aagggagagccaggacttccagggctgcctggactcccagggattaagggagagccagga
ttccttggtccccagggagagccaggtctgccaggccttccaggaactaagggcgagaga
ggcgagcacggagcgcccggaaaaggcgagcgaggcgaagttggaccggtcggggcaaag
ggttcgcaaggagaggctggcacccccggtcccaaagggtcaaagggtgaaaccggagat
aaaggagactatgggcccgcggggccaaagggcccgtctgggcaaaaaggagacccgggg
gccaccgaaatcatcgactataatgggaatattcaggaagcgttacagaggattaccact
gttactgtgacgggcccgccgggtcctcccggccctgtgggaccgcacggaatcaagggg
gaccgcggtttgcctggcctcccgggacttgacggcgaacgtggctacaagggttccaaa
ggagacatgggaatgcccggagcgtcgggagacaaaggagcaaccggtttacctggttta
cctggtgtgaatggggtgaaaggagacaagggagattcgggtctccccggtccacaaggt
tcttcaattattggccctccaggggcgccaggacctcatgggcccccgggacctatggga
ccccacggtttcccaggaccgaagggggagcctggtttgcacggtaccaagggggcgcgt
ggggaaccaggccataagggggaccgaggacccttgggtctccctggagcctccggtctg
gacggcaagcccgggattaggggcaccgacggacccgcgggtccagctggtccggccggc
ccgaagggggacagaggcgagcgaggggcggcgggggaccctggaccgagggggccctac
ggattgcctggagcagcggggacaccgggcttggatgggttgccaggtttgacaggagag
aaaggcgacgttggggaaagaggagagaagggggagaagggaaagaagggaaaaaaaggg
cctaagggcgagaaaggagaacagggtgcccccggattagatgcaccctgcccattgggt
cccgacggcttgccgatgcctggctgctggcagaagtga
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