Syngnathoides biaculeatus (alligator pipefish): 133495094
Help
Entry
133495094 CDS
T09681
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b
KO
K06236
collagen type I alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04510
Focal adhesion
sbia04512
ECM-receptor interaction
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133495094 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133495094 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133495094 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133495094 (col1a1b)
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133495094 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
133495094
NCBI-ProteinID:
XP_061665288
LinkDB
All DBs
Position
22:complement(10163851..10177714)
Genome browser
AA seq
1449 aa
AA seq
DB search
MFSFVDIRLALLLSAAVLVVRGQGEDDSTFGSCTLDGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSECADPIIPEGECCPICPDQDGPVNPQEGIKGDVGPKGDVGPMGPPGND
GIPGQPGLPGPPGPPGPPGLGGNFSPQMSYVDHSKSSGGPPMPGPMGPMGPRGPAGPAGS
SGPQGFTGPPGEPGEPGASGPMGARGPAGPPGKNGDDGEAGKAGRPGERGAPGMQGTRGF
PGTPGLPGIKGHRGFNGLDGAKGDAGPAGPKGEAGASGENGIPGAMGARGLPGERGRPGP
AGPAGARGNDGNVGPAGPPGPTGPAGPPGFPGGAGVKGETGAQGARGSEGAQGARGEPGN
PGPAGAAGPAGAPGTDGAPGAKGATGPAGIAGAPGFPGGRGPAGGQGAVGAPGPKGNNGD
PGAAGPKGEPGAKGETGPVGIMGLPGPSGEEGKRGPRGEPGVGGPRGPPGERGAPGARGF
PGADGAVGGKGAPGERGATGPAGPQGATGEAGAPGAPGAPGAKGMTGSPGNTGADGKVGP
TGPPGQDGSPGPAGATGARGQPGVMGFPGPKGVAGENGKPGEKGPAGAMGGVGAPGKDGD
VGAPGPSGPAGPAGEKGEGGPAGPPGFQGLPGPQGATGETGKPGEQGVAGEVGPHGPSGP
RGDRGFPGERGAPGLGGPIGPRGAPGNSGNDGPKGEPGAPGTNGAAGSPGMQGMPGERGA
AGLSGVKGERGEAGAKGGEGAPGKDGARGLTGPIGPPGPPGSQGEKGEPGPIGAVGPTGP
RGSPGERGEAGPAGPAGFAGPPGADGQPGAKGETGETGPKGDAGAPGTSGPVGPAGPQGP
AGPPGAKGATGGAGSPGVTGFPGPAGRVGPAGPSGAAGPPGPAGPVGKDGARGARGETGP
AGRPGEPGAAGVAGSQGERGSPGSDGAPGPAGIPGPQGIGGQRGIVGLPGLRGERGFAGL
PGPAGEPGKQGPGGPVGARGPPGPAGPPGLSGAPGEAGREGSQGHDGAPGRDGPAGAKGD
RGESGIAGPPGPPGAPGAPGAVGPSGKTGDRGEPGPAGSAGAAGPAGVRGPAGPAGAKGD
RGEAGEAGERGHKGHRGFTGMQGLPGPAGTSGERGPAGVSGPAGPRGPSGSNGSPGKDGM
NGMPGPIGPPGPRGRNGEMGPSGPPGPPGPPGPPGAPGGGFDFISQPIQEKAPDPFRSGH
YRADDPSVLRDRDMEVDTTLESLTKRIEKLRSPDGTQKSPARMCRDLRMCHPEWKSGTYW
VDPNQGSPLDAIKVHCNMETGETCVSPSQSTVPMKNWYLSRNPRDKKHVWFSESMTGGFQ
FQYGSDGADSEDVSIQMTFMRLMANQASQNITYHCKNSIAYMDSASGNLKKALLLQGSND
VEIRAEGNSRFTYSVSEDGCTSHTGSWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFG
VEVGPVCFL
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgcttttgctcagcgcagctgtgcttgtggtg
agaggtcaaggcgaggatgacagcacatttggcagctgcacactagacggacagttgtac
aacgacaaggatgtgtggaaaccagagccgtgccagatctgtgtttgcgacagcggcaca
gtgatgtgcgacgaggtcatctgcgaggacacttctgaatgcgccgaccccatcatccca
gagggcgaatgctgtcccatctgccccgaccaagacggacccgtgaacccccaagaggga
atcaagggagacgttggtcccaagggagatgtgggtcccatgggtcctcctggaaatgat
ggaatccccggacagcctggacttcctggcccacccggcccccctggcccccctggcctt
ggcggaaacttctctcctcaaatgagctatgtggaccactccaagtccagtggcggccca
cccatgcccggcccaatgggtccaatgggtcctcgtggtcctgctggacctgctggatct
tctggtcctcagggtttcactggtccccccggagagcctggtgagcccggagcttctgga
cctatgggagctcgcggtcccgctggcccccctggaaagaacggagatgatggtgaggct
ggcaaagctggacgccccggtgagcgtggcgctcccggcatgcagggtacccgtggattc
cccggaactcctggacttcccggcatcaagggacacagaggtttcaatggcttggatgga
gctaagggagatgccggacctgctggacctaagggagaggctggtgcctctggtgagaac
ggtatccccggtgccatgggggctcgtggtctccccggtgagagaggccgtcccggacct
gctggccctgctggtgctcgtggtaacgatggcaatgttggccccgctggacctcctgga
cccactggacctgctggaccccctggattccctggcggtgctggtgtgaagggagagact
ggtgcccaaggagcccgtggttctgagggagcccagggagctcgtggtgagcccggtaac
ccaggacccgctggagctgctggccctgctggtgctccaggaactgatggtgcccccggt
gccaagggagctactggtcccgctggtattgctggtgcccctggtttcccaggtggtcgt
ggtcccgctggaggtcagggtgccgtcggtgctcctggtcccaagggtaacaatggtgac
ccaggtgctgctggtcccaagggagagcctggcgccaagggagagactggccccgttgga
attatgggacttcctggcccatctggtgaggagggcaaaagaggacctcgtggagagccc
ggtgttggtggaccccgtggacctcctggagagcgcggtgcccccggtgcccgtggtttc
cctggagctgatggagctgttggtggcaagggagcccctggtgagcgcggtgccactggc
cctgccggacctcagggagcaactggtgaggccggagctcctggcgctcctggtgcacct
ggagccaagggtatgactggtagccccgggaacactggcgctgatggcaaagttggaccc
actggtcctcctggacaagatggatcccctggacccgctggagccactggagccagaggc
cagcctggagttatgggattccccggacctaagggagttgctggagagaatggcaagccc
ggtgagaaaggacctgctggtgctatgggtggcgttggtgcccctggcaaagatggtgat
gttggtgctcctggaccttctggccctgctggacctgctggagagaagggagagggtggc
cctgctggacctcctggattccagggtcttcccggaccccaaggtgctactggtgagact
ggcaagcctggtgagcagggtgttgctggtgaggttggaccccacggtccttctggaccc
agaggtgacagaggtttccccggtgagcgtggtgctcctggcctcggtggtccaattgga
ccccgtggtgcccccggcaattctggtaacgatggacccaagggagagcccggtgccccc
ggtaccaacggtgctgcaggaagccccggtatgcagggaatgccaggtgagcgcggagct
gctggtctttctggagtcaagggagagagaggtgaggctggcgccaagggaggcgaaggt
gcccctggcaaagatggcgctcgcggtctgaccggacctatcggaccccctggacctcct
ggttctcagggcgagaagggtgagcccggccccattggagctgttggacctaccggccct
cgtggttcccctggtgagcgtggagaggctggccctgctggacctgctggatttgctgga
ccccctggtgctgacggtcaaccaggtgccaagggagagactggtgaaactggacccaag
ggtgatgctggtgctcccggtaccagtggacctgttggacctgctggccctcagggacct
gctggtcctcctggtgccaagggtgctactggtggtgctggttctcctggtgttactggt
ttccctggacctgctggcagagttggacccgctggcccctccggagctgctggaccccca
ggtcccgccggccccgttggcaaagatggagcaagaggagctcgtggtgagactggtccc
gccggtcgtcctggtgagcctggtgctgctggtgttgcaggatctcagggtgagagagga
tctcctggttccgatggtgcccctggtcccgctggtattcccggaccccaaggtattggt
ggacagcgtggtattgtaggtctccctggactccgtggagagcgtggtttcgctggtctg
cctggacctgctggtgagcctggaaagcagggacctggtggacctgttggtgcccgtgga
ccccctggacccgctggaccccctggactgtctggtgctcccggagaggctggtcgtgag
ggatctcaaggacacgatggtgcacctggtcgcgatggacctgctggagccaagggagac
cgtggtgagtctggcattgctggacccccaggacctcctggtgctcctggtgcccctgga
gctgttggcccctctggcaagactggtgatcgtggagagcctggtcccgctggttctgct
ggcgctgctggtcccgctggtgtccgtggtcccgctggacccgctggagctaagggagac
agaggagaggctggtgaggctggagagagaggccacaaaggacacagaggattcactggc
atgcagggacttcctggacctgctggaacttccggagagagaggacccgctggagtctct
ggacctgctggaccaagaggaccctctggatctaacggctcccctggtaaagatggcatg
aatggtatgcctggaccaattggacctcctggacctcgtggtcgcaatggagagatggga
ccttctggtcctcccggacctcccggacctcccggaccccccggtgctcccggtggtgga
tttgacttcatcagccagcctattcaggagaaggccccagatcccttccgctctggccac
taccgtgctgacgaccccagtgttctccgcgatcgtgacatggaggtcgacaccactctg
gagtctctgaccaagagaattgagaagctcagaagtcccgacggcacccagaagagtccc
gcccgcatgtgccgcgacctgagaatgtgccaccctgagtggaagagcggtacctactgg
gtggaccccaaccagggctctcctctggacgccatcaaggtccactgcaacatggagact
ggtgagacttgcgtctcccccagccagtctaccgtgcccatgaagaactggtacctgagc
aggaaccccagagacaagaagcacgtctggtttagcgagtccatgaccggtggattccag
ttccagtacggcagcgatggagctgattccgaggatgtcagcatccagatgaccttcatg
cgtctgatggccaaccaggcctcccagaacatcacataccactgcaagaacagcatcgcc
tacatggactccgcctccggcaacctcaagaaggccctgctgctccagggctccaacgac
gtggagatcagagccgagggcaacagccgcttcacgtacagcgtcagcgaggatggctgc
acgtcacacactggctcatggggcaagacagttatcgactacaagacatcgaaaacatcc
cgcctgccaatcattgacattgctcctatggatgttggtgcccctgatcaggaatttggc
gtcgaagttggccctgtttgcttcttgtaa
DBGET
integrated database retrieval system
