Syngnathoides biaculeatus (alligator pipefish): 133495351
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Entry
133495351 CDS
T09681
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133495351 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133495351 (msh2)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133495351 (msh2)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
133495351
NCBI-ProteinID:
XP_061665869
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Position
22:16629245..16642701
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AA seq
983 aa
AA seq
DB search
MRESKNDFFLKNITKKMSLKNEKHFSDGFVPMDTNNISSLPVYSPHAVEAGDSNMAVQAK
QNLSMDSAAEHGFLNFFFSMPAKPDTTFRIFDRSDYFTVHGKDATFAAKEVFKTTGVIKH
LGSGTRKLESVVLSKLNFEAFVRDLLLVRQYRVEVYKNHSKSSKEHDWKIEYKGSPGNLS
QFEEILFGGGNGAENFAGVVAVRAAAGVVGVGYVDAVQCTMGVCEFPDNEGFSNLESLLV
QVGPKECLLAHGENSSDGNKLREVVRRGGVLVSDRKRAEFSGKDLVQDLNRLLRAKRGEA
VASNTLPELDKQVAMSCLAAVVRYLELLSDESNFNSFSLTSMELGQYMRLDNAAIKALNL
FQGAPDDTSGAHSLAGLLNKCRTPQGQRLVNQWLKQPLLDNTKIEERLDLVESLVCDSEL
RQTCQDDLLRRFPDLQRMAKKFHRHSATLQDCYRVYQAVGHIPALVAVLERSSGNHQVLL
EAVFVSPLRDLQGDFSKYQEMIETTLDMNQIEHHEFLVKASFDPVLSELREKMDALEKSM
QAVLGAAAKELGLEAGKTVKLESSAVLGFYLRVTCKEEKSLRNNKKFTTLDVQKNGVRFT
NSKLSALNEDYGRSKEEYEEAQNAIVKEIINIASGYVDPLQSLGDVVALLDAAVSFAAAA
VSAPVPYVRPRLLRDGPRRLELRQARHPCMETDADTCFIPNDVSFVQGEKSFYIITGPNM
GGKSTFIRQVGVIALMAQIGCFVPCEEAELSVIDSILARVGAGDSQVKGVSTFMSEMLET
AAILRSATEKSLVIVDELGRGTSTYDGFGLAWAISEHVADEIGCFCLFATHFHELTALAA
QRPAVRNLHVTALTAHDTLTMLYRVKPGACDQSFGIHVAELARFPPSVVAAAKEKAEELE
DFQEADASARGGEPEAKRPRGQKRVGEDLIQDFLEEVKSLPVAAMTEDEARAALGRMKEA
LLAKNNAYVSELLARWLPATASP
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgagagaaagcaaaaatgatttcttcttaaagaacattacaaaaaaaatgtcattaaaa
aacgaaaaacatttttcagatggttttgttcccatggatacaaacaatatatcgtcactt
cctgtttatagtccccatgcagtagaggcgggagattccaacatggcggtgcaagccaaa
caaaacctgtccatggacagcgcggccgagcatggcttcctcaacttcttcttctctatg
ccggccaaaccagacaccactttccgcatcttcgaccgcagcgactacttcacggtacac
gggaaagacgccacattcgccgcgaaggaagttttcaagacgaccggcgtcatcaagcac
ttgggttccgggactcgtaaattggaaagtgtggtgctgagcaaactcaactttgaggca
tttgtgagggatttgctcctggtcaggcagtaccgcgtcgaagtatacaagaaccacagc
aagagcagcaaggagcacgactggaagattgagtacaagggctctccgggaaacctcagc
cagttcgaggagatcttgtttggcggcggaaatggcgccgaaaactttgcgggggtcgtc
gcggtgcgcgcagcagccggtgtggtgggcgtgggctacgtggatgcggtgcaatgcacc
atgggcgtttgcgagttccctgacaacgagggcttctccaatctggagtcgctcctggtc
caggtcggtcccaaagagtgtctgctggctcacggggagaacagttctgacggcaacaag
ctgcgggaggtggtgcggcgcggcggcgtgctcgtctcggacaggaagcgggccgagttc
agtggcaaggatttggtccaggacctcaacaggctgctgagagccaaacgaggagaggcg
gtggcgagcaacaccctccccgagctggacaagcaggtggcaatgtcctgcctggccgca
gtggtccgctacctggagctgctctccgacgagtccaacttcaactccttcagcttgaca
tcgatggagctgggtcagtacatgaggctggacaacgctgccatcaaggcgctcaacctc
ttccagggtgcacccgacgacaccagcggcgctcactcgttggccggtctgttgaacaag
tgtcgcactccccagggccagcggctggtcaaccagtggctcaaacagccgcttctggac
aacactaaaatagaggagaggctggacctggtggagagtttagtatgcgactctgagcta
aggcagacgtgccaggatgacctcctgcggcgcttccccgacctccagcgtatggccaag
aagttccaccgtcacagtgccaccttgcaggactgctaccgcgtgtaccaggccgtcggc
cacatccccgcactcgtcgctgtgctggaaagatcttcaggcaaccatcaggtcctgctg
gaggcggtctttgtctcccccctcagggacctccagggcgacttcagcaagtaccaggag
atgatcgaaaccacactggacatgaaccagattgagcaccacgagttcctggtgaaggct
tccttcgatcccgtgttgagcgagctgagagagaaaatggacgccctggagaagagcatg
caggccgtgctcggcgccgccgccaaagagctaggtttggaggccggcaagacggtgaaa
ctggagtcgagcgccgtgctgggcttctacctgcgcgtcacctgcaaggaggagaagagc
ctgaggaacaacaaaaagttcaccacgctggacgtgcagaagaacggcgtgcgcttcact
aacagcaagctgagcgccctcaacgaggactacgggcgcagcaaggaggagtacgaggag
gcccagaacgccatcgtcaaggagatcatcaacatcgcctcaggctacgtggaccctttg
cagtcgctgggcgacgtggtggccttgctggacgcggcggtcagcttcgccgccgcggcg
gtctcggcccccgtgccttacgtgcggccccgcctgttgcgcgacggcccccgccgcctg
gagctgcggcaggcgcgccacccctgcatggagacggacgccgacacctgcttcatcccc
aacgacgtctccttcgtccagggggagaagagcttctacatcatcacaggaccaaatatg
ggcgggaagtcgacgttcatccgccaggtgggcgtgatcgctttgatggctcaaatcggc
tgctttgtgccgtgcgaggaggcggagctcagcgtgattgacagcatcctggcccgggtg
ggggcgggggacagccaggtgaaaggagtgtccaccttcatgtcggagatgctggagacg
gccgccatcttgcgctcggccacggaaaagtcgctggtcatcgtggacgagctgggccgc
ggcacgtccacctacgacggcttcgggctggcctgggccatcagcgagcacgtggccgac
gagatcggctgcttctgtctgttcgccacgcacttccacgagctgacggcgctggcggcg
cagcggcccgccgtgcgcaacctgcacgtgacggcgctgacggcgcacgacacgctcacc
atgctgtaccgggtcaagccaggcgcgtgcgaccagagtttcgggatccacgtggccgag
ttggcccgcttcccgccgtcggtggtcgccgcggccaaggagaaggccgaggagctggag
gacttccaggaggcggacgcgtccgccagggggggcgagcccgaggccaagcggccgcgc
ggccaaaaacgggtcggagaagacttgatccaggacttcctggaagaagtcaagtctctt
cccgtcgccgccatgactgaggacgaggcgagggcggcgttggggcgaatgaaggaggcg
ctgctcgccaagaacaacgcgtacgtctccgagctgctggcgcgatggcttcccgccacc
gcgtctccgtga
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