Syngnathoides biaculeatus (alligator pipefish): 133495624
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Entry
133495624 CDS
T09681
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133495624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133495624
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133495624
Spliceosome [BR:
sbia03041
]
Complex C
Other components
Step II factors
133495624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
PRP38_assoc
AAA_19
GIPC1_GH2
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
ABC_tran
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
133495624
NCBI-ProteinID:
XP_061666477
LinkDB
All DBs
Position
22:16388845..16398253
Genome browser
AA seq
1191 aa
AA seq
DB search
MADPDELSQLEFLSLVSKVCTELDNHLGISDKDLAEFVISLAEKEPTFDGFKALLLENGA
EFTDSLIGNLLRLIQTMRPPSKSSIRKGSEVQKPKSEKDRLKELFPALCRPNEAPTKVLD
EEDVKVASDAMKELEMFMPSVSGTDSKSDKGRSEKSRRRSRSRSRDRHRTRDRDRRRRRH
SRSRSRDRDRHRDRERSRRRERSSRWGERSPSPRRDQDWKDKHVDRPPPEEPSVGDIYNG
KVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKIKVLSFTGSK
TSLSMKDVDQETGEDLNPNRRRNVGPDGSEEVNMRNPDGPTNLNLGPARELEQDDTLERK
RLTKISDPEKWEIKQMIAANVLSKEEFPDFDDETGILPKVDDEEDEDLEIELVEEEPPFL
RGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERRELKQAAREAEMDSIPMGLNKHW
VDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSILEQRESLPIYK
LKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKR
VSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDSELGQYAIIMLDEAHE
RTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYT
KEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELII
LPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKT
GIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTV
LSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPML
CKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEGDHLTLLAVY
NSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICS
GFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTID
PRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccccgacgagctctcccagctcgaatttttatctttggtgtccaaagtgtgc
acggagctggataaccatcttggaataagcgacaaagatttagctgagttcgtcattagt
ctggcggaaaaagaacccacctttgacggattcaaagctctcctgctagaaaatggagct
gagtttacagactcgctcatcggcaacctgctcaggctcattcagaccatgagacccccg
tctaagtcatctatcaggaaaggctctgaagttcagaagccaaagtcggagaaggacagg
ctgaaggagcttttccctgcgctctgcagaccaaacgaagcaccgacgaaagtccttgac
gaagaggacgtgaaggtggcttctgacgccatgaaggagctggagatgttcatgcccagc
gtgagcggcaccgattccaaaagcgacaagggccgctcggagaagagcagacgccgcagt
cggagcaggagccgggaccggcacaggactcgggacagggaccgcaggaggcgccgtcac
tcccgctctcgctccagggaccgcgaccgccacagagaccgcgagcgctcccggaggcga
gagcgatcgtcccgttggggcgagcgctcgccgagcccccgcagggaccaagactggaag
gacaagcacgtggaccgcccgcctccagaggagccgtccgtgggcgacatctacaacggg
aaagtcaccagcatcatgcagtttgggtgctttgtccaactggaggggctcaggaaacga
tgggaaggcctggtgcacatttccgagctgcggcgggaaggccgagtggccaacgtggct
gacgtggtcagcaaagggcaaagggtcaagatcaaagtcttgtccttcacgggctccaaa
accagcctcagcatgaaagatgtggatcaggagacgggcgaggacctgaaccccaacagg
agaaggaatgtgggccccgatggcagcgaggaggtgaacatgaggaaccccgacgggccc
accaacctcaacctggggcccgcccgagagctggagcaggacgacacgctggagaggaag
aggctcaccaagatctccgatcctgagaaatgggagatcaaacagatgatcgcagccaac
gttttatccaaagaagaatttcccgattttgacgacgagacagggattcttcccaaagtt
gacgacgaagaagatgaagacttggaaatcgagctggtggaagaggagccgccgttcctg
agaggacacaccaaacagagcatggacatgagccccgtaaagatcgtcaagaatccagac
ggttccctgtcccaggcggccatgatgcagagcgcgctggccaaagagcggagggagtta
aagcaggcggcccgcgaggcggagatggactccatccccatggggcttaacaaacactgg
gtcgacccgctgcccgacgttgacggcaggcagatcgccgccaacatgcgcggcatcggc
atgatgcccaacgacatccccgaatggaagaagcacgcgtttggcggcaacaaggcgtcg
tatggaaagaagacgcagctgtccatcctggagcagagggagagtttgcccatctacaag
ctgaaggagcaacttatacaggccgtccacgacaaccagattttgatcgtgatcggcgag
acgggctccgggaagaccacgcagatcacgcagtacctggcggaggcgggctacactacc
cgcgggaagatcggctgcacgcagccccgccgcgtggccgccatgtcggtcgccaagagg
gtctcggaggagtacgggtgctgtctcggacaggaggtgggctacaccatccgttttgag
gactgcacgagccccgagacggtaatcaagtacatgacggacggcatgctgctcagggag
tgtctgatcgactcggagctgggccagtacgccatcatcatgctggacgaggcccacgag
aggaccatccacaccgacgttctcttcggtctgctcaagaagacagtgcaaaagcgcacg
gacatgaaactgatcgtgacgtcggccacgctggacgccgtcaagttctcgcagtacttc
tatgaggcgcccatcttcaccatccccggcagaacgtacccggtggaggttctctacacc
aaagagcccgagaccgactacctggacgccagcctcatcaccgtcatgcagatccacctg
accgagccccccggtgacatcctggtgttcctgaccgggcaggaggagatcgacaccgcc
tgtgaaatcctctacgagcgcatgaagtcgctcgggcccgacgttccggagctcatcatt
ctgccggtttattcggcgctgcccagcgagatgcagacccggatctttgaccccgcgcca
ccgggcagcagaaaagttgtcatagcaacaaacatcgccgagacgtcgctgaccatcgac
ggcatctactacgtggtggaccccggcttcgtcaaacagaaagtctacaattccaagacg
ggcatcgaccagctggtggtgacgcccatctcgcaggctcaagccaagcagagggcgggc
cgggccggcaggacgggtcccggcaaatgttaccggctgtacacggagcgggcgtacagg
gacgagatgttgaccaccaacgtgccggagatccagaggaccaacttggccagcacggtg
ctctcgctcaaggccatgggcatcaacgacctgctgtccttcgacttcatggacgcgccc
cccatggagacgctgatcacggccatggagcagctctacactttgggggcgctggacgac
gaggggctgctcacgcgtctgggccgaaggatggccgaattccccctggagcccatgttg
tgcaagatgctgatcatgtccgtgcatctgggctgcagcgaggagatgctcaccatcgtg
tccatgctgtccgtccagaacgtcttctacaggcccaaggacaagcaggccttggcggac
cagaagaaggccaagttccaccagcccgagggcgaccatctcaccctgctggccgtctac
aactcgtggaagaacaacaagttctccaacccgtggtgctacgagaacttcatccaggct
cgttcgctcaggagagcccaggacatccgcaagcagatgttgggcatcatggaccgacac
aagttggatgtggtgtcctgcggcaaagcgaccgtgcgggttcagaaggcaatctgcagc
ggtttcttccggaacgcagccaagaaggacccccaggagggctacaggaccctcatagac
cagcaggtggtctacatccacccatccagcgctttgttcaatcgccagcccgaatgggtg
gtgtaccacgagctggtcctgaccaccaaggagtacatgcgcgaggtgaccaccatcgac
ccgcgctggctggtggagttcgcgccggccttcttcaaggtgtcggacccgacccgcctc
agcaagcagaagaagcagcagcgcctggagccgctttacaaccgctacgaggaacccaac
gcctggcggatctccagagccttccgccgacgctaa
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