Syngnathoides biaculeatus (alligator pipefish): 133495625
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Entry
133495625 CDS
T09681
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133495625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133495625
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133495625
Spliceosome [BR:
sbia03041
]
Complex C
Other components
Step II factors
133495625
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
Flavi_DEAD
AAA_19
ABC_tran
AAA_16
nSTAND3
T2SSE
AAA_30
TsaE
Cas3-like_C_2
NB-ARC
PhoH
GIPC1_GH2
AAA_7
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
133495625
NCBI-ProteinID:
XP_061666479
LinkDB
All DBs
Position
22:16398410..16408633
Genome browser
AA seq
1171 aa
AA seq
DB search
MPIWKANMAALDGIKRLEYLSLVSKVCTELENHLGISEKDLGEFIISLADRHPTLEAFKA
SLTQNGADFTETLTANLFRLIKTMQASARQEHEHQPKSEQDKLKEKYPALCKPDDPVWMI
NSRHVSKNDEQVAAAAMKELEMLMPHCAHKTSTTLHGGGADGDSARKRRRSGSRERDGGA
TGKRRRKRPSRWSDRPPGPPGDATQEGVVERPLADVPAVGDIYCGKVSSVMQFGCFVQLE
GLRKRWEGLVHVSELRKEGRIADVSSVVGRGQKVKVKVLSLTGTKASLSMKDVDQDTGED
LNPSRRRNLGAGARDDAMRNPDFPVEVCVVESEENPSGQKRMAKITDLEKWEIKQMIAAD
VLPKEEYPEFDEGTGILPIFDDEEDVDVEIDLVEEEPPFLRGQTRWSTNMSPVKIVKNPD
GSLSQAAMMQSALAKERRELKQAARADEMDRIPTGLHKNWIDPMPDYDGRQIAANMRGVG
APPPDVPEWKRYAFGGNQVSYGKKTELSIVQQRENLPIFKLKEQLVQAVHDNQILIVVGE
TGSGKTTQITQYLAEAGYTARGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFE
DCTSTETLIKYMTHGMLQRECLIDPDMGQYSLVMLDEAHERTIHTDVLFGLLKKTVQKRK
DLKLIVSSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYAREPETDYLDASLITVMQIHL
TEPPGDVLVFLTGQEEIDTACEILFERMRMLGPDVPQLIILPVYSALPSEMQTRIFDPAP
LGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQIVYNSKSGIDQLVVTPISQAQAKQRAG
RAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLAFDFMDAP
PMETLITAMEQLYALGALDDEGLLTRPGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIV
SMLSVQNVFYRPKDKQVQADQRKAKFSQPEGDHLTLLAVFNSWKNNKFSGPWCFENFIQG
RSLKRAQDIRKQMLSIMDRHKLDVVSCGKSTARVQKAICSGFFRNAARKHPQDGYRTLID
QQVVYLHPSSTLFNRQPEWLVYHELVLTTKEYMREVTTIDPRWLVELAPAFFKVSDPTRL
SKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgccaatttggaaagccaacatggcggcactggacggaatcaaacgtttggagtattta
tctttggtatccaaagtctgtaccgagttggaaaaccatctcggaataagtgaaaaggat
cttggtgaattcatcatcagcttggcagatagacatccgacattggaggcctttaaagct
tccttgacacaaaatggtgcagatttcacagaaacgctcactgctaatttatttagactt
atcaaaaccatgcaagcgtccgctcgtcaagaacatgaacaccaacccaaaagtgaacaa
gacaagctgaaagagaaatatccagctttatgtaaaccagatgatcccgtgtggatgatt
aactcacgtcacgtcagcaaaaatgacgagcaagttgcggcagccgccatgaaggagctg
gaaatgctcatgcctcactgtgcacacaagacaagcacaacgttgcacggtggcggcgca
gatggagatagcgctcggaagcgtcgtcgctccggttcgagagagcgcgatggcggagcg
accggcaagcgtcgacggaaacggccctcccgctggagcgaccggccgcccggccccccc
ggggacgccacccaggagggagtcgtcgagcggcctctggccgacgttcccgcggtgggc
gacatctactgcgggaaagtgtccagcgtcatgcagtttggatgctttgtgcagctggaa
ggcctcaggaagcgctgggagggcctggtgcacgtgtcggagctgcgcaaggaaggccga
atagccgacgtgtcgtctgtggtcggcagggggcaaaaggtcaaggtcaaagtgctgtcc
ttgaccggaacaaaggccagcctcagcatgaaggatgtggatcaggacaccggggaggac
ctgaacccgagccgcaggaggaacctcggcgcgggcgcccgagacgacgccatgcggaat
cccgactttcccgtggaggtctgcgtggtggagagcgaggagaacccgagcgggcaaaag
aggatggccaagatcaccgacctggagaagtgggagatcaaacagatgatcgccgccgac
gtgctcccgaaggaggagtacccggagttcgacgagggaacggggatcctgcccatcttc
gacgacgaagaggacgtggacgtggagatcgacctggtggaagaggagccgcccttcctg
cgggggcagacccgctggagcacaaacatgagtcccgtcaagatcgtcaagaatcccgac
gggtcgctgtcgcaggcggccatgatgcagagcgccctggccaaagagcgccgcgagctc
aagcaggcggcccgcgcggacgagatggaccgcatcccgaccggcctgcacaagaactgg
atcgaccccatgcccgactacgacggccggcagatcgccgccaatatgcgcggcgtcggc
gccccgccccccgacgtgcccgagtggaagcggtacgccttcggggggaaccaggtgtcg
tacggcaagaaaacggagctgtccatcgtgcagcagagggagaatcttcccatcttcaag
cttaaggagcagctggttcaggccgtccacgacaaccagatcctgatcgtggtgggcgag
accggctccggcaagaccacgcagatcacgcagtacctggccgaggcgggatacacggcg
cgcgggaagatcggctgcacgcagcctcgccgcgtggccgccatgtcggtcgccaagagg
gtctcggaggagttcgggtgtcggctgggccaggaggtgggctacacgatccgtttcgag
gactgcaccagcaccgagacgctgatcaagtacatgacgcacgggatgctgcagcgcgag
tgcctgatcgaccccgacatgggccagtactccctcgtcatgctggacgaggcccacgag
aggaccatccacaccgacgtgctcttcggtctgctcaagaagacggtgcagaagcgcaaa
gacctgaagctgatcgtgtcgtcggccacgctggacgccgtcaagttctcgcagtacttc
ttcgaggcgcccatcttcaccatcccgggcaggaccttcccggtggaggtcctctacgcc
agggaacccgagacggactacctggacgccagcctcatcaccgtcatgcagatccacctg
accgagcctcccggcgacgttctggtgttcctgacgggccaggaggagatcgacacggcc
tgcgagatcctcttcgagcgcatgaggatgctcggccccgacgtgccccagctcatcatc
cttccggtttactccgctctgcccagcgagatgcagacccggatctttgaccccgcgccg
ctcggcagcaggaaggtcgtcatcgcgacaaacatcgccgagacgtcgctgaccatcgac
ggcatctactacgtggtggaccccggcttcgttaagcagatcgtgtacaactccaagtcg
ggcatcgaccagctggtggtgacgcccatctcgcaggctcaagccaagcagagggcgggc
cgggccggcaggacgggtcccggcaaatgttaccggctgtacacggagcgggcgtacagg
gacgagatgttgaccaccaacgtgccggagatccagaggaccaacttggccagcacggtg
ctctcgctcaaggccatgggcatcaacgacctgctggccttcgacttcatggacgcgccc
cccatggagacgctgatcacggccatggagcagctttacgctctcggggcgctggacgac
gaggggctgctcacccgaccgggccgcaggatggccgaattccccctggagcccatgttg
tgcaagatgctgatcatgtccgtccatctgggctgcagcgaggagatgctcaccatcgtg
tccatgctgtccgttcagaacgtcttctacaggcccaaggacaagcaggtccaggcggac
cagaggaaggccaagttctcccagcccgagggcgaccatctcaccctgctggccgtcttc
aactcgtggaagaacaacaagttctccggcccgtggtgcttcgagaacttcatccagggt
cgctcgctcaagcgagcccaggacatccgcaagcagatgctgagcatcatggacagacac
aagttggacgtggtgtcgtgcggcaagtcgaccgcgcgcgtccagaaagccatctgcagc
ggtttcttccggaacgccgcccggaagcacccccaagacggctaccggaccctcatcgac
cagcaggtggtctacctccacccgtccagcacgctcttcaaccgccagcccgaatggctg
gtgtaccacgagctggtgctgaccaccaaggagtacatgcgcgaggtgaccaccatcgac
ccgcgctggctggtggagttggcgccggccttcttcaaggtgtcggacccgacccgcctc
agcaagcagaagaagcagcagcgcctggagccgctttacaaccgctacgaggaacccaac
gcctggcggatctccagagccttccgccgacgctga
DBGET
integrated database retrieval system
