Syngnathoides biaculeatus (alligator pipefish): 133496281
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Entry
133496281 CDS
T09681
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133496281 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133496281 (hbs1l)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133496281 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
AAA_29
Motif
Other DBs
NCBI-GeneID:
133496281
NCBI-ProteinID:
XP_061667639
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All DBs
Position
23:14105224..14128621
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AA seq
703 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATANQFIYSRREKQAPKEETLEEEEY
EENDAPMSPTISHNLDPLEQAKLYSCLDHMRAVLGDSMPDSVLNQAAIRCGFDAQRALDA
VLSEEPKMAHVPCAAADVAPPVQKLSEEKAPLPQRSKQAAVIEKAKSRGFSQNKLDCEFI
PKVARMTVSGKKQTMGFDVPSSGDNSVVAATAQRGSSPQNCPVTLAAGEATPKRPETPFR
ESNEDEFASVPTPGRSAGKARQAIDIKAELEKRQGGKPLLNLVIIGHVDAGKSTLMGHLL
YLLGNVNKRTMHKYETESKKAGKASFAFAWVLDETGEERDRGVTMDVGMTKFETKSKVVT
LMDAPGHKDFIPNMITGAAQADVAVLVVDASRGGFEAGFEAGGQTREHALLVRSLGVTQL
AVAVNKMDQVNWQQERFQEITSKLGHFLKQAGFKESDVFYIPTSGLSGENLSTRSLVSEL
TTWYSGLSLLEQIDAFRPPQRSVDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGEKLL
AMPPNETCLVKGITLHDAPLDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRVCTRF
RARLLLFNFEVPITKGFPVLLHYGTVSEPATITKLLSVLHKSTGEVLKKKPKCLGKSMNA
IVEIQTQRPVALELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacacagaaacgtccggggctacaactacgacgaagattttgaagatgatgac
atgtatggacaatctgtggaggatgactattgtatatcacccgcaacagcaaatcagttc
atctactctcgtcgtgagaaacaagcgccaaaggaagagacccttgaagaggaagaatac
gaagaaaacgatgcacccatgtccccgaccatcagccacaaccttgacccacttgagcaa
gccaagctctactcatgcctggaccacatgagggccgtgctgggtgactctatgccagac
tccgtgttgaatcaggcagccataagatgcggattcgatgcgcagagggcgctcgatgcg
gttttgtccgaagaacccaaaatggcccacgtcccctgcgccgcagccgacgttgcgccg
cctgtccagaaattgagcgaggagaaagcgcctctacctcaaagaagcaagcaggcagcc
gtgattgagaaagctaaaagcagaggcttctctcaaaataaactggactgtgaattcata
cccaaagtggcccgtatgactgtctctggcaagaagcagaccatgggcttcgatgtcccc
agcagtggggataatagcgttgtcgctgccacggcgcagcgaggcagcagccctcaaaac
tgcccggtaactttggccgccggcgaggctacccccaaacgacccgagacgccattcaga
gagtcgaacgaggatgagtttgccagcgttcccactccgggacggtccgccgggaaggcc
cggcaggcgattgacataaaggctgaactcgagaagagacaagggggcaaacctcttttg
aatttggtgattataggtcacgtcgatgcaggaaagagcacgctcatggggcacctcctc
tatcttctgggcaacgtaaacaaacgcaccatgcacaagtacgaaaccgaatccaagaag
gcgggcaaggcgtcgttcgcctttgcctgggtattggatgaaactggcgaggagcgggac
agaggcgtaacaatggatgtcggtatgaccaagtttgagacgaaatcaaaggtggtgacg
ctaatggacgcgcctggacacaaagacttcatccccaacatgatcacaggagctgcccag
gcggatgtggccgtgctagtggtggatgccagccgagggggattcgaggcgggtttcgag
gctggtggccagaccagggagcacgccctgttggtgcgctcgctcggcgtcactcagctg
gcagtggcggtcaacaaaatggaccaggttaattggcaacaagaacgcttccaggaaatc
acgtccaaactcggccatttcctcaagcaggcaggctttaaggagtcagatgttttctac
atccccaccagtgggttgtcgggagagaacctcagcaccagaagtttggtttccgagctc
accacttggtactccggcctcagcctgctggaacagattgatgccttcaggcctcctcaa
cgctctgtggacaaaccattccgactgtgcgtgtctgacgtctttaaagaccagggctcg
ggcttctgcatcacaggcaagatcgaggctggttatattcagactggagagaaactgctt
gccatgccccccaatgagacttgtctagtcaaaggaatcactctgcatgatgcccctttg
gactgggctgcggctggagatcatgttagcctgactgtaactggtatggacatcatcaag
atcaatgtggggtgcgtgttctgcgaccccaaagagcccatccgagtttgcacccgattc
agagcacgactattactcttcaattttgaggttcccatcacaaaaggattcccagtattg
ttgcattatggtacagtaagcgagccagccaccattactaaacttctaagtgttttgcac
aagagcaccggcgaggtcctcaagaagaaaccaaagtgtttgggcaaaagcatgaacgca
attgtggagatccagacgcagaggcctgtcgctttggaactgtacaaagatttcaaggag
ctgggtcgcttcatgctgcgctacgtgggctccactatcgctgcaggcgttgtcacagaa
atcaaagaatga
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