Syngnathoides biaculeatus (alligator pipefish): 133496661
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Entry
133496661 CDS
T09681
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133496661 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133496661 (cdc40)
Spliceosome [BR:
sbia03041
]
Complex C
Other components
Step II factors
133496661 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
EIF3I
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Beta-prop_IFT140_1st
PQQ_2
Motif
Other DBs
NCBI-GeneID:
133496661
NCBI-ProteinID:
XP_061668486
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All DBs
Position
23:complement(8293828..8303936)
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AA seq
581 aa
AA seq
DB search
MSAAVSSLVSYGSDSDSENESQADTSTKTTDPSDPDATVHLKPLQPGSTMALAVLNSAPE
VAVKESVETGVHLDPSLKEVTYNPSYETMFAPEFGPENPFKTQQMAAPRNMLSGYAEPAH
VNDFMFEQQRRTFSSLGYALDPSVDTNQVTGSSYIGAVEEAEKNNGLNVFESAYKKPDKR
KKVKGGDAGDIDNYLGPWAKYVDEKSVAKPTEEEKKELDEITAKRQKRGRNEDEAPAEEK
TILHVKDMFDYQGRSYLHIPQDVGINLRSSEAPDKCYLPKKQIHVWSGHTKGVSAIRLFP
RSGHLLLSSSMDCKIKLWEVYNERRCIRTFIGHSKAVRDICFNNGGNQFLSAAYDRYIKL
WDSETGKCISRFTNKKVPYCVKFNPDEEKQNLLVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgccgtctcgtccctcgtttcatacggcagcgattccgactcggaaaatgag
tcacaagccgacactagtaccaaaacaacggacccgtcggatccggacgcaacggtccac
ctcaaacctttgcagcccggttcgacgatggctttggccgtgctgaattccgcccccgaa
gttgccgtcaaggagtctgttgagactggcgtacatctcgacccctccctgaaggaagtc
acttataacccgtcgtatgaaaccatgtttgcaccagaatttggaccggaaaacccgttc
aaaacccaacaaatggcggccccgaggaacatgttatctggctacgcagaacctgctcac
gtcaacgacttcatgttcgagcagcagaggaggaccttttcgtcgcttggctacgcgttg
gatccgtctgtggacacaaaccaagtcaccgggagcagttacatcggagcagtggaggag
gctgagaaaaataacgggttgaacgtgtttgagagcgcttacaagaagccagacaaaagg
aaaaaggtcaaaggcggcgacgcaggagatatcgacaactacttgggaccgtgggcgaaa
tacgtcgatgagaaatcggtggccaaacccaccgaggaggagaagaaagagctggatgag
atcacggccaaaaggcaaaaacgagggaggaatgaagatgaagctccggcagaagagaag
accattcttcatgtcaaagacatgttcgattaccagggcaggtcctacctgcacatcccg
caggacgtgggcatcaacctgcgttcttccgaggcgccggacaagtgttacctgcccaaa
aagcaaatccacgtctggtctgggcacaccaagggggtcagcgccatccgactgtttcca
cgttcaggtcaccttcttctttccagctccatggattgtaaaattaagttgtgggaggtg
tacaacgagaggaggtgcatacggacgtttattggccacagcaaagcggtgcgagacatt
tgtttcaacaatggcggcaatcagttcctcagcgccgcctacgaccgctacatcaagctc
tgggactctgagaccggaaaatgcatctcccgcttcaccaacaagaaggtgccctactgc
gtcaagttcaaccccgacgaagaaaagcagaatcttttggtggccggcatgtcagataag
aagatcgtccagtgggacatccgaacgggcgaggtggtccaggagtacgaccgtcacctg
ggcgccgtcaacaccatcaccttcgtggacgagaaccggcgcttcgtcagcacgtcggac
gacaagagtcttcgagtttgggagtgggacatccccgtggacttcaagtacatcgccgag
cccagcatgcactccatgccggcggtgacgctctctcccaacggtaagtggcttgcgtgc
cagtccatggacaatcagattctgatcttcggagcccaaaaccgcttccgactgaacaag
aagaagatcttcaagggccacatggttgccggctacgcctgccaggtggacttctccccg
gacatgagctacgtcgtgtcgggcgacgccgacgggaaactgaacatctgggactggaag
accaccaagctgtaccacaggatcaaggcccacgacaaggtgtgcatcagcgccctgtgg
cacccccacgaaacctccaaggtcatcacctgcggttgggacggccagatcaaactctgg
gactga
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