Syngnathoides biaculeatus (alligator pipefish): 133496893
Help
Entry
133496893 CDS
T09681
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133496893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133496893
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133496893
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133496893
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133496893
U7-dependent histone pre-mRNA processing factors
133496893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Coq4
Motif
Other DBs
NCBI-GeneID:
133496893
NCBI-ProteinID:
XP_061668943
LinkDB
All DBs
Position
23:complement(16809212..16818524)
Genome browser
AA seq
686 aa
AA seq
DB search
MTTKRKSGPSVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEVDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADEMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAINVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMTEPEEICTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIGEYEDNEQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
ACTQGQRVSGILVKRNFNYHILTPADLSEYTDLNVGTVTQTQAIPYTGPISLLVSQLRCL
TGDVQQVESAEKITIQIFKSITLIYEAGMVLLEWLANPLNDMYADVVTTVVLEVQSNPNA
QKILDARPEVFDQEVFIERLELMLHDMFGEDCVDFKDGEKMTINVDGAVAQVDPESREVT
CTDDEALKDLLEVAIHRLHDALTPVS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccaaacgtaaatctgggccatcagttcctgcggaagaaagcgaccagttgctt
attcgtccgctcggagctggccaagaggtgggaaggtcctgcattatcctggagttcaag
gggcgaaaaatcatgctggactgtggcatccacccgggcctggagggcatggacgcgctg
ccatacattgacctgattgatccggccgaggtcgacctgctgctcataagccacttccat
ctggaccactgcggagctcttccatggttcctgcagaagaccagcttcaaggggcggacc
ttcatgactcatgccaccaaggccatctatcgctggctgctgtcagactacgtcaaagtc
agtaacatctcggccgatgaaatgctgtacaccgagacggacctggaggagagcatggac
aagatcgagaccatcaacttccacgaggtcaaggaagtggccggcatcaaattctggtgc
taccacgcaggacacgtgctgggcgctgccatgttcatgatcgagattgccggcgttaag
ttgttgtacacaggggacttctcacgtcaggaggacagacacttgatggcggcggagatc
ccgagcgtcaagccggacatcctaatcacggagtccacgtatgggacgcacatccatgag
aagcgggaggaacgggaggcgcgtttctgcaacacggtccatgacattgtcaaccgagag
ggtcgttgtttgattcccgtctttgcgctgggacgagcgcaagagcttttgctcatcctg
gacgagtactggcagaaccatccggagctccacgacattcccatctactacgcgtcatcc
ctggccaggaagtgcatggcggtctaccagacgtacatcaacgccatgaacgacaagatt
cgcaaggccatcaatgtcaacaacccctttgtctttaagcacatcagcaacctgaagagc
atggaccatttcgatgacatcggccccagtgtagtgatggcctctccaggcatgatgcag
agcggcttgtcccgagaactgttcgagagctggtgcacagacaagaggaatggcgtcatc
attgccggatactgtgttgaggggacgctcgccaagcacatcatgacggagccggaagag
atctgcaccatgtcaggtcagaagctccctctgaagatgtccgtggactacatctccttc
tcggcgcacaccgactaccagcagaccagcgagttcatccgagcactcaaaccaccacac
gtgatcctggtccacggcgagcagaacgagatggcccgactgaaggcggcgctcatcggc
gagtacgaggacaacgagcaggtccacattgaagtccacaaccccagaaacacagaagct
gtcacgctcaacttccgaggagagaaactggccaaggtgatgggctcgctggcagacaag
gcatgcactcaagggcagagggtatccggcatcctcgtcaagagaaacttcaactatcac
atcctcacgcccgccgatctctcagagtacacagatttgaacgtgggcacggtcactcaa
acgcaggccatcccatacaccgggcccatttcactgctggtcagccaactccgatgcctc
actggcgacgtgcagcaggtggagtctgccgagaagatcaccatccagatcttcaagagc
attactctgatttatgaagctggcatggttctgctggagtggttggccaaccctctgaat
gacatgtacgccgacgtggtgacgacggtggttctggaggtccagtccaaccccaacgcc
cagaagatactggatgccaggccagaggtttttgaccaggaagtctttattgaaagactg
gaactcatgctacatgacatgtttggtgaagactgcgtagatttcaaagatggcgaaaag
atgaccatcaatgtggacggcgctgtggcgcaggtggaccccgagagccgggaggtaacg
tgcactgatgacgaggctctgaaggacttgttggaggtggccatccatcggctgcacgac
gccctcaccccagtctcctga
DBGET
integrated database retrieval system
