Syngnathoides biaculeatus (alligator pipefish): 133497945
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Entry
133497945 CDS
T09681
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133497945 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133497945 (cstf3)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133497945 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_6
TPR_19
VapC50_C
Motif
Other DBs
NCBI-GeneID:
133497945
NCBI-ProteinID:
XP_061670216
LinkDB
All DBs
Position
3:10870667..10889022
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AA seq
757 aa
AA seq
DB search
MPSSPALLPSCPRRQKGSAPPRQRHHLPHFKRRLNPAYEHPERSSRARAAAAAEYVPEKV
KKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVTQFPSSGRFWKLFIEAEVKA
KNYDKVEKLFQRCLMKVLHIDLWKCYLAYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM
SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYSKYEEGIN
IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNSPQEAQQVDMWKKYIQW
EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDVWYESAQYLEQSSKLLAEKGDMNNSK
LFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRMKHEKVHSIYNKLLAIEDIDPTLVY
IQYMKFARRAEGIKSGRIIFKKAREDLRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK
KYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGNLSPEKSGEIWSRFLAFESNIGDL
ASILKVERRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASELKALGYKDVSRTKLAALL
PEAVAAPSVPLLKDEMDRKPEYPKPDTNQMIPFQPRHLATPGLHPVPGGVFPVPPVAVLL
MKLLPPPTCFTGPFVRVDELIETFRRCTLPETVEAAVELITGRQPDGGGEGNGAVENHAA
TKALKRPNADSDEEEDKGSVAPPVHDIYRARQQKRIR
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgcccagttcgcctgcactgctgccatcttgtcctagacgacagaaagggagcgctccc
cctcggcaacgccaccatctcccgcatttcaaacgtcggctgaatcccgcatacgaacat
ccagaaagatcaagccgtgctcgggcggcggcggcagcagagtatgtcccggagaaggtg
aagaaggcagagaagaaattggaagaaaacccatatgaccttgacgcttggagcattctg
attcgagaagcacagaatcaacctattgataaagcaaggaagacatatgagcgacttgtc
acacagtttccaagttctggcagattctggaagctattcattgaagctgaggttaaggca
aaaaactatgacaaagtagaaaagttgtttcagagatgcctgatgaaagtgttgcacatt
gacctgtggaaatgttacctcgcatatgtgcgagagaccaaaggaaagctcccaagctac
aaggagaagatggcccaggcatacgactttgctttggataaaattggcatggaaattatg
tcgtatcagatttgggtggactacattaacttcctcaagggagtcgaggctgtgggctca
tacgcagagaaccagcgcatcacagcggtgcggcgggtctaccaacgaggctgtgtgaat
cccatgatcaacatagagcaactctggagagattatagcaaatatgaggagggaatcaat
atacacttggccaaaaaaatgattgaggatcgaagcagagactacatgaacgcgagaaga
gtagcaaaggagtacgaaactgtgatgaaagggctggacaggaacgcaccctcggtgccg
cctcagaactccccccaggaggcccagcaggtggacatgtggaagaagtacatccagtgg
gaaaaaagcaacccgctgcgcacagaagaccaaactctcatcacaaaaagagtgatgttt
gcctatgagcagtgtctgctagtcctaggacaccatcctgatgtgtggtacgaatcagct
cagtacctggagcagtccagcaagttgttggcagagaaaggggacatgaataactccaag
ctattcagcgatgaggccgctaacatttatgagcgagccattgggacgctgctgaagaag
aacatgcttctttacttctcatttgctgactacgaagaaagccgtatgaagcacgagaag
gtgcacagcatctacaataaactgctagccatcgaggacatcgaccccacgttggtgtac
atccagtacatgaagttcgccaggagggcggagggaatcaaatcggggcgcatcattttt
aaaaaggcccgcgaggatctgcgcacacgccatcatgtctacgtcacagcggctctgatg
gagtactactgcagcaaggataaatccgtggcctttaaaatttttgagcttggtctgaag
aaatatggtgacattccagagtacatactcgcatacatcgattacctctcacaccttaat
gaggataacaacaccagggttctgtttgaacgggttcttacctcaggaaacctttcacca
gagaagtcaggagaaatctggtctcgttttctggccttcgagagcaacatcggcgacttg
gccagtattctgaaggtggagcggcgccgcttcaccgccttcaaggaggagtacgagggc
aaagagacggccttgctggtggacagatataagttcatggacctgtatccctgctccgcc
agtgaactcaaggctctgggttacaaggatgtgtctcgtaccaaattagcagctctgctt
cctgaggctgtggcggcgccctccgtgcccctgctgaaggacgaaatggacagaaaacca
gagtaccccaagccagacacgaatcagatgatcccttttcagccgcgccacctggccact
ccaggcctgcaccctgtccccggcggagtgttcccagtccccccagtggccgtcctctta
atgaagctgctccccccacccacgtgtttcaccggtccttttgttcgagtggatgaactc
attgagaccttcaggagatgcacacttcctgagactgtcgaagctgctgtggagctcatc
actggcagacagcccgatggcggcggcgagggcaacggagctgtggagaaccacgccgcc
accaaggcgctcaagaggcccaacgccgactcggacgaggaagaagacaaaggttcggtg
gcgccgcccgtccacgacatctaccgcgctcgccaacagaagaggattcgatag
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