Syngnathoides biaculeatus (alligator pipefish): 133498176
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Entry
133498176 CDS
T09681
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbia03000
]
133498176 (prdm1b)
Transcription factors [BR:
sbia03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
133498176 (prdm1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
zf-C2H2_6
zf-met
zf-C2H2_jaz
Zf-C2H2_ZNF451_C
zf-C2HE
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
133498176
NCBI-ProteinID:
XP_061670734
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All DBs
Position
1:694388..703977
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AA seq
714 aa
AA seq
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MKRDSTEGDMSAWREVDFALNCTYIVPDQVSNPSFNLPKAMTSIPRNLSFEYNKDNEVNG
VFSKEYIPQGTRFGPLQGDIYTKDNVPKQANRKYFWRIYSNGHLQNFIDGYDVHRSNWMR
YVNPARSLSEQNLVACQNGRDIYFYTIRPVEPKEELLVWYCQEFAQRLCSQQDNTKHKNM
NVDDEQEYAKLHLPQQMWNKDTIKEEVKEERKDEAVDVEMLGRDTPPDTPDDQIMDFSKK
IEKKEKLTRDPEDQGFIPSPHPEHRGLGHGVNAPYLPEHLPALSSDQRNLPLHLHGLYSH
REGLVSSYPLYPQSRPVQPAYQLLPPFTSHYPHLLLPSYSPPFPGMLPSRGPLRCSGYLG
TDGIPYPPLSNGNLLPMSLPYPSSPQGGLKELTPNVSPPRGAPATPELSPIPKPMSLVPS
PEHTSSGCEEAMNLTLDITKGSSGLRNRPGHKSLPYPLKKQNGKIKYECNICSKTFGQLS
NLKVHLRVHSGERPFQCNLCKKSFTQLAHLQKHHLVHTGEKPHECQVCQKRFSSTSNLKT
HLRLHSGEKPYQCKLCSTKFTQYIHLKLHRRLHGSHDRNYHCQLCSQTFFHRFSLRIHQC
SCCTANSGSPVNVTLKEMLERFDASQEADTLAETASAPQVEEAVERWLARTLEGEGKEDQ
KEATFLLKALTVAMNAPVSQSALPVSQHGSPAAYQERASVVHLHKRSTVKLEGH
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaagagggatagcacagagggagatatgagcgcttggcgggaggtcgacttcgctctc
aattgtacttacattgtaccggatcaggtgtcgaacccaagtttcaatctgccgaaagcc
atgacttccattccacgcaacttatcttttgagtacaacaaagacaacgaggtaaatggt
gtgttcagcaaagagtacattcctcaggggactcgatttggacccctgcagggagacatc
tacaccaaagacaatgtgcccaaacaggccaacagaaaatacttctggaggatttatagc
aatgggcatctgcagaacttcatcgatggctatgacgtccacaggagcaactggatgcgt
tacgtcaatccggcacgatctctgagtgagcagaacctggtggcatgccagaatggccgc
gacatctacttctatacaattcgacctgtggagcccaaagaggagttgctcgtgtggtac
tgccaagagtttgcccagaggttgtgcagccagcaggacaataccaaacacaaaaacatg
aatgttgatgatgagcaagagtatgccaaactgcaccttcctcagcagatgtggaacaaa
gacacaataaaggaagaggtgaaagaggagagaaaagatgaagcggtggatgtggagatg
ttggggagagacacccctcctgatactcctgatgaccaaatcatggattttagcaaaaag
atcgaaaaaaaggagaagctcaccagggatccagaggatcaagggttcattccatcccct
catcctgaacatagaggacttggccatggagtgaatgctccttacttaccagaacacctc
cctgcactgtcgtccgatcaacgaaatcttcccctccacctccatggcctctacagccac
agggaaggcctggtctcatcttacccgctttaccctcaatcgagacctgtccagcctgcc
taccagctccttcctcccttcacctcacattatcctcacctcctcctcccttcatattcc
cctccatttcctggcatgctgccgtccagaggacccctccggtgcagtggatatcttggg
acggacggaatcccttaccctcccctaagcaatggcaatctactcccaatgtctttgccg
tacccgtcatccccacagggtggtctgaaagaattaactcctaatgtgtcaccaccaaga
ggtgccccagcaacacccgagctctctcctattcccaagccaatgagcctggtcccctca
cctgagcatacttcctctggctgcgaagaggcaatgaacctaacattggacattaccaaa
ggcagctcagggttacgcaatcgccctgggcacaaatcattgccctatcctttgaaaaag
cagaacggaaagatcaagtatgaatgtaacatctgctcaaagacttttggacaactgtct
aatctcaaggttcacctccgtgttcacagtggtgagagacctttccagtgtaacttgtgt
aaaaagagtttcactcaactggcccatctgcagaagcatcacctcgtccatacaggggag
aaaccacatgagtgtcaggtgtgtcaaaagcgcttcagtagcaccagcaacttgaaaact
caccttcgtctccactctggggaaaaaccttaccagtgcaagctgtgcagcaccaaattc
actcaatacatccacctcaagctgcaccgccgcttacacggcagccacgaccgtaattat
cactgtcagctgtgctcccagaccttcttccaccgtttctcccttcgcatccaccaatgc
agctgctgcacggccaattccggctcacccgtcaatgtcaccttgaaagaaatgcttgag
cgcttcgatgccagccaagaggccgacacgctggcagaaactgcatcggcaccgcaggtg
gaggaggctgtggagagatggcttgctcgtacattggaaggtgaggggaaggaggaccag
aaagaggccacctttctgctgaaagctctgactgtggctatgaacgcacctgtaagccaa
tcagcactgcctgtttcccaacacggctctccagcggcctatcaggaaagagctagcgtt
gttcatctccacaagcgttcaacagtgaagttggagggtcattga
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