Syngnathoides biaculeatus (alligator pipefish): 133498178
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Entry
133498178 CDS
T09681
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133498178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133498178
03036 Chromosome and associated proteins [BR:
sbia03036
]
133498178
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133498178
Coactivators
SAGA/TFTC/STAGA complex
133498178
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
133498178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
133498178
NCBI-ProteinID:
XP_061670694
LinkDB
All DBs
Position
3:19561978..19700210
Genome browser
AA seq
1095 aa
AA seq
DB search
MAGASDPLEDMLSSEVDEKAVSDLVGSLESQLAGQSNSAGKTEESRGAGSVAPANHHLEK
TLPAPVGSPTLDHQQQQGRRNKPDMRQELNCTDVGADKTVKSLSLGCTPTPGEPSDGVAA
ASNSGSQSHGASITTLPVSGVSTSPPASNISTAATSGRPLNASPDSGEPYSDASKRRPAT
PRRSASARIKSLNGAAAVTTRGNSSGSSPVAGADDAGGSPADHQPASTAAINTSTFTLAK
ASLPAGQSAIALDRGTPTIALHRLPSHIVASIAQNGTSVSALAQQGAQTSPVNSPPSSST
SSSPPAQENHTKVAPEPAGAPSECQSEIVTTSSVINIVSSNAVTTTPTTNTTTNTVTQPL
TTTATTTTTTTTIAAASATTGSVGGQTISVTTAISAVRPITSIPATPAVPAIPPAPAAAS
PTTLTPTRPAVTTAQRIVAPQLIVRPPQQQTTIQLPPGFTIPSGMVLVRTELGQLVLVPQ
QALAQAQAQAQAQAQSQGQAQAQNNISPRPATPTTVASFRVTTPQPHCTEKSRQICYATT
VLQKGPVPPVVAVTAPQQTPVVPAPQAPPAQAPPQPQQTTGIGAAPGAPVVSQVRVYKIY
FSSGQPVAISPTGGSVRGAFTRACRYCRGESKAQTEMQENVKKCKNFLATLIKLASHNSP
LPETSKNVKALVQDLLDAKIEPEEFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLLNNQ
QSLTQPPQQGVKPVVPLTSGPSVHIRHPNSVGATTGASALPTGTLGHPAAAGMKTIGSVG
GQVRMPVMITQSIRAQGTMGKVGAFQAGRTPVGLAVQIAGNQKNKLNDPGGGSFRDDDDI
NDVASMAGVNLNEESARILATNSELVGTQIRSCKDEAFLHPGLLHRRILETAKKFGVTDV
PMEVVTFISHAAQSRLRTVVEKVSTIAQHRLDSCKDDDCYEQSADVRSQLRFFEQLERME
KARKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGP
RKKRKVDSPGATPSGTELSGSTAGSPAGSSSTTTSSSRQYARQRITRVNLRDFIFYMEQE
RDTARSLLLYRALLK
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgcctccgaccccctggaagatatgctctcttccgaggtggatgagaaggct
gtgagcgacttggtgggctcgctggagtctcagctggctggccagagcaattcggcgggg
aaaaccgaggagagccgaggtgctggctccgttgcccccgctaaccatcacttggagaaa
acgctaccagctccggtgggctccccaacactagatcatcaacaacaacaagggcgccgt
aataaacccgacatgcgccaggaattaaactgcacggacgttggcgcggataaaactgtc
aagtctctttccctgggctgcaccccaacccccggtgagccctccgacggcgtcgctgct
gccagcaatagcggctctcaatcacatggagcatccatcacaacactgcccgtgtccggc
gtgtcaacttctccgccggccagcaacatcagcaccgcggccacctctggccgcccattg
aatgcttccccggactcaggtgagccatactcggacgcttcgaaacgacgcccggccact
ccgcgacgaagcgcctcggctcggattaagagtttgaacggtgccgctgccgtgacgacc
cgagggaacagcagcggtagcagccccgtggcgggggccgacgacgccggcggcagcccc
gcggaccaccagccggcgagcaccgcagccatcaatacgtcgacgttcaccctcgccaaa
gccagcctgcctgcgggtcagtcggccattgccttggaccggggcacccccaccatcgcc
ttgcacagacttcccagtcacatcgtggccagcatcgcccagaacgggaccagcgtgtcg
gcgttggcccagcagggtgctcagacgtcccctgtcaactcgcccccatcgtcctccact
tcttcctcaccacctgcacaagagaaccacactaaagtcgccccagagcctgcaggagct
cccagcgaatgtcagtccgaaattgtcaccacaagctctgtcataaacattgttagctct
aatgccgtgacaacaacacccacgactaacactaccaccaacacagtcactcaaccttta
accaccaccgctactacgaccaccaccaccacgactatagcggccgcctcagcgacaaca
ggcagtgttggtggtcagaccatatcggtgaccaccgccataagcgcggtccggccgatc
acatccatccccgctacacccgccgtccccgccatccctccggctccagccgcagcctcg
ccaaccactctgaccccgacccggccagctgtgaccacggctcaaagaattgtagcaccg
cagctgatcgtcagaccgccccagcagcagaccaccatccagctgccccctgggttcacc
atcccatctggcatggtgctggtacggaccgagctgggccagctggtgttggttcctcag
caggctttagcgcaagctcaagctcaagctcaggctcaggcgcagtctcagggtcaggcc
caggcccagaataacatctcgccgcgcccagccactcccaccacggtggcctccttcaga
gtcaccactccgcagccgcattgtactgagaagtcaagacagatatgctatgctaccact
gtgctacagaagggccctgtgccgccagtcgtggcggtgacagctccgcagcagaccccg
gttgttccagccccccaggcgcctccagcccaggcccccccacaaccccagcagacgaca
ggcattggtgcggctcctggagctcctgtcgtgtcccaggtcagggtctacaagatctac
ttttcaagcggccagcctgtcgcgatctcccctacagggggtagtgtgaggggggcattc
acacgcgcatgccgctactgccgtggagaaagcaaggcgcagacggaaatgcaggagaac
gtgaagaagtgtaaaaacttccttgccacgctcatcaagctggcgtcgcacaattcccca
ttacccgagacatccaagaatgtcaaagctttggtacaagacctgctggatgccaagatc
gagccggaagagttcaccagccggctgcagacggagctcaagtcatcgccacagccttac
ctggtgccctttcttaagaagagcctcccggccctgcggctgtctttgctgaacaatcag
cagtccctgactcagccgccgcagcagggtgtcaaaccagtggtgcccctcacaagcggg
cccagtgtccacatacgccacccgaacagcgtcggcgccaccacaggtgccagcgcgctg
cccaccgggacgctgggccatccagctgctgcgggtatgaagaccataggctctgtgggt
ggacaagtccgaatgccggtgatgatcacgcagtccattcgtgctcaaggtacaatggga
aaggtgggtgccttccaagcagggaggactccggtgggcttggctgtccagatcgctggc
aatcaaaaaaacaagctaaatgacccaggaggaggctctttcagggacgatgatgacatc
aacgacgtggcctccatggcgggtgtcaacctgaacgaggagagcgcccgaatacttgcc
accaactctgagctggttggcacgcagatccgctcgtgcaaggatgaagccttcctgcat
cctgggctgctccaccgacggatcctggagacagccaagaagtttggcgtcacggacgtt
cccatggaggttgtaacatttatctcccacgctgcacagtcgcgactccgcactgtcgtt
gaaaaggtttcgaccatcgcacagcacagactggactcctgtaaggacgatgactgctac
gaacagtcggcagacgtgcgctctcagctgcgcttcttcgagcaactggagaggatggag
aaggcgagaaaagatgagcaggaaagagagatcctcttgaaagccgccaagagtcgctcc
aggcaagaggacccagagcaagctcgactgaaacagaaagccaaggagatgcagcaacag
gaactagcccagatgaggcagcgggacgctaacctcacagcactagcggcaatcggacca
cgcaaaaaacgcaaggtggactcgccgggggccaccccatcagggactgagctctcgggc
agcacggcgggctccccggccggctcgtcgtccacgaccacctcttcgtctcgccagtac
gcccgtcagcgcatcacccgcgtcaacctcagggacttcatcttctacatggaacaggag
cgagacacggcccgttcgctgctgctctaccgcgccctcctcaaatag
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