Syngnathoides biaculeatus (alligator pipefish): 133498319
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Entry
133498319 CDS
T09681
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
133498319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbia04121
]
133498319
Ubiquitin system [BR:
sbia04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133498319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CH
LIM
DUF4757
DUF4455
Motif
Other DBs
NCBI-GeneID:
133498319
NCBI-ProteinID:
XP_061670989
LinkDB
All DBs
Position
3:complement(25307287..25336031)
Genome browser
AA seq
1096 aa
AA seq
DB search
MEWRQQSTFSCADAFNEARRWIEEVTGKPFGCSDFRAALENGVLLCDLINQLKPGIIKKL
NRLSTPIAGLDNINVFLKACGKLGLNESQLFHPGDLQDLSTRAIVRRNEGSRRLKNVLIT
IYWLGRKAYLDDCYNGNQLNFKAFEGLLGLALSKALDDGNNTFEKDGACRDCSQPGRTGD
TRETSVKSFDLGDARAPSANSEGCGSDAEAEQVFRRENTRPIKGHIPPSVLRRKRNEENR
NVSTSLTRSKSLSDMPTVCNSHKVYEGFVGKVQDVGSTKWSQDRKWRSHSAGRDNETRWQ
DALTKWKNHRRNTKSNLRRKSLDREHVINKMTNEALTDHQKKEKHCAQSEREQLSAQRQN
PDPPAQSTSPPKFSSSFLWTHRAPLAGSYATEVTFSAGSSYSHQNICPAQAPSVGAIPAS
DGDKLGEETHFASLTLNGAAVTTPIEDNAFSFQTQFKPQGNSAPVHPVTDLSQPENVAAQ
IASPSTPAFPGEAEPADTVDISNAFEDLSDHSPWSKMEGNENSSETSGDKSRCQSAANTK
YLTRTVSWSCSASLPRGFKRSDGSCRLSSVITARPFQTKHSSMSTLPRLRNVNDYQSPAW
ESEGEATPSTTGSEVLKRQTATSYLRGQDQGPEQAANRVEQTASGKVECKNLSGQTFRTS
CSQLQPQDSTRTAPRSCASIDNSKVDHNDMSVSLAPTQNSRPVFGFQLHGDTTGARTKYI
QRGSLADLCPPRGDDEILTVDGGLDLAALMSSSLREEKITSAQQIGTHTMDMQRDEKKGC
LESAVSDLQGPFLTPSTSRWSWDHEDDRRRQEKKQEEQERLLQSNLGMSNDIETTARGIY
LNDLTKTKEQNPEKFWVKPQNSTQKDLYDIWAEDTSGFAPLSPAHRAKSLSTPALAVSHK
QPKGERRKRKEEPLSKAEQERQQILEEMKKRTQLLTDNSWIRQRSSSFYKEPIYIGTPLK
RYESLEALGTHRSTFTGVCPRPHSAAAGSCAQSLGNSTFYNAGPRPSQRSTTTYSHPVRK
VSGRRTCSLCDGHLSSGAAMVIEALGLCFHFACFQCVGCGQYLGKKEAGVQVRVRNKKPY
CEPCYFQLQSTNSPSM
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgccagcaaagcactttcagctgcgcagacgccttcaacgaggctcggcgt
tggattgaggaggtaactggaaaaccttttggctgcagcgactttcgtgcagctctggag
aatggagtcctgctttgcgatctgatcaaccagttaaagcccggaatcattaaaaaactg
aatcgactttctacgcccattgctggcttggataacataaatgtgtttctaaaagcttgt
gggaaattgggactcaacgagtcacagctgtttcatccgggagacttgcaggacctgtca
actcgagcaatagtcaggcgaaatgaaggcagtcgaagactaaaaaatgttcttatcaca
atctactggttgggacgtaaggcctaccttgatgattgctacaatggtaatcagcttaat
ttcaaggcctttgaaggactcttggggttggctttgtcaaaggctcttgatgatggcaac
aatacatttgagaaggatggtgcctgccgagactgcagtcaaccagggagaacgggcgat
acgagggaaacttcagtaaaaagcttcgacttgggagacgcccgagccccaagtgcaaac
agtgaaggttgtggaagtgatgcagaagctgagcaagtatttaggagagagaacacacgg
ccgatcaaaggccatatcccaccttcagtgctcaggaggaaacgaaatgaagaaaacaga
aacgtttctacttcattgaccaggagcaaatcgttgagtgatatgccaacggtatgcaat
tcacataaggtatacgaaggctttgtgggcaaggtccaggatgtgggatcaactaaatgg
agtcaagacaggaaatggaggagccacagtgctggcagagacaatgagactcggtggcaa
gatgctttgacaaaatggaaaaatcatcgcaggaatacaaagtctaatctccgcaggaag
tcccttgaccgagaacatgtcattaacaagatgacaaatgaagctttgactgaccatcaa
aagaaggaaaagcactgtgcacagtcagaaagagagcagctgtcagcacaaaggcaaaac
cctgacccacccgctcagtccacttctcctccaaagttctcaagctcctttttgtggaca
catcgagctccactggcgggaagctatgctactgaggtgacttttagtgctggctcttct
tacagtcaccaaaacatttgccctgcacaggcaccctcagtgggtgccatacctgcctct
gatggagacaagctgggagaggagacccattttgcatctttgacattaaatggagcagca
gtaaccacgccaatagaggacaacgcttttagcttccaaacccagttcaaaccccaaggc
aattctgcccctgttcatcctgtaactgatctgagtcagccagagaatgttgcagcccaa
attgcttctccaagcacgccagcatttccaggtgaagcagaaccggctgacaccgtggat
atctccaatgcttttgaagacctttctgaccacagcccctggtctaaaatggagggaaat
gaaaactcttctgaaacatcaggagataaaagtagatgtcagtcagctgcaaacacaaag
tatttgaccagaactgtttcctggtcatgctcagccagccttcctagaggtttcaaacgg
tctgacggttcctgtcggctctcgtctgtcatcacagccaggccctttcagaccaagcat
tccagtatgtcgacgttgccaagacttcgcaatgtaaacgactaccagagtccagcgtgg
gagagtgaaggagaggccactccttccacaaccggcagtgaagtgctcaaaaggcagact
gccacttcttatctcagaggtcaggaccagggtcctgagcaggcagccaaccgtgtagaa
caaactgcttcaggaaaggtagagtgcaagaacctttccggccagacttttcgaaccagc
tgctctcaactccagccccaagacagcacacgcacagctccgcgaagttgtgccagcatt
gacaactcaaaggtagaccacaatgacatgagtgttagtcttgctcctacacagaacagt
agaccggtctttggtttccagttgcatggggacacaactggagcaagaacaaaatatatt
caacgaggcagcctggccgatctctgcccgccgcgtggagacgacgagatcctgactgtt
gatggcggtctggatctggcagccctcatgagctcgagcctgcgcgaggaaaaaattaca
tcagcccagcagattggcactcataccatggatatgcaacgcgatgaaaagaagggatgc
ttggaatcggcagtttcagatctccaggggccattcctcaccccgtccacatccaggtgg
tcgtgggaccacgaagacgaccgcaggcggcaggagaagaagcaggaagagcaagagcgc
ctccttcagagtaatttgggaatgagcaatgatattgagaccactgccagagggatttat
ttgaatgatttgacaaaaacaaaggagcagaaccctgaaaaattctgggtcaaacctcaa
aatagtacacagaaagatctgtatgacatctgggctgaggacacctctggctttgctccg
ctgtctcctgcacacagagcaaagtccttgtctactccagcattagccgtttcacacaaa
caaccaaaaggtgaacggaggaaaagaaaagaggaacctctttccaaggccgagcaagag
aggcagcaaatcttggaggagatgaaaaagagaactcagcttctgactgacaacagctgg
atacgccagcgtagcagcagtttttacaaggagccgatctacatcggcacaccccttaaa
aggtatgagtctctcgaggctcttggaacccatcgttcaacctttacgggggtttgcccc
cgaccgcattcggcggctgcaggttcttgtgctcaaagtctcggcaactccaccttttac
aatgctggacccaggccatcccagagaagtacgactacatactctcaccctgtcaggaag
gtcagtggaaggagaacttgcagtttgtgtgacggtcacttgagtagtggggcagccatg
gttattgaagcccttggtctctgcttccattttgcctgttttcagtgtgtgggttgcggg
caatatcttggaaaaaaggaggctggagtacaggttcgggtccgaaacaagaaaccatac
tgtgagccctgttatttccaacttcagtcaaccaattccccatccatgtga
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