Syngnathoides biaculeatus (alligator pipefish): 133498371
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Entry
133498371 CDS
T09681
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133498371
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sbia01009
]
133498371
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sbia04515
]
133498371
Protein phosphatases and associated proteins [BR:
sbia01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133498371
Cell adhesion molecules [BR:
sbia04515
]
Cadherins
Protocadherins
133498371
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
Neur_chan_memb
RCR
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
133498371
NCBI-ProteinID:
XP_061671089
LinkDB
All DBs
Position
3:complement(27339884..27598324)
Genome browser
AA seq
1202 aa
AA seq
DB search
MDLKDYYLLGALLACIWLDPSIAQELIYPIREELQENVLIGNIPRDLNISHTNAATGASS
NLVYRLVSKAGDNPLVRVLSSTGEIFTTSNRIDREKLCPGPSFEDSECSFEIEVVILPND
YFRLIKIKIIVRDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHKYEL
INGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGSPQKSSTAILQVT
VTDVNDNRPVFKESQVEVHIPENSPLGTSVVQLQATDADVGANAEIRYVFGTQVSPTTKR
LFALNTTSGLITVQRPLDREETAIHKLSVVASDGSPSVARAIVSINVTDVNDNPPNIDLR
YIISPINGTVFLSEKDPINTKIALITVSDKDTDINGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDYEGTKEYNFKIVASDSGKPSLNQTALVRVRLEDENDNSPIFTQPVIELAVMEN
NKRDLFLTTLSATDEDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREDQDKFLFT
ITARDNGTPPLQTQAAVIVTVLDENDNNPKFTHNHFQFFVSENLPKYSTVGVITVTDSDA
GENAAVSLSILNDNENFILDPFSGVIKSNVSFDREQQSSYTFDVRAVDSGRPPCSSAAKV
TINVIDVNDNTPVVISPPSNTSFKLVPLSSIPGSVVAEVFAVDGDTGMNAELKYTIVHGN
NKGLFRIDPVTGNITLEEKPALSDIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVGNY
TLINDLIRRRMETPIERNISESSEIYQSGDYLTIMIAFVTGALVVIIVIFVTVLLRCRHT
SRFKAAQRKKQGTEWMSPNTENKQNKKKKRRKRKSPKSSLLNFVTIEGNKPDDPAHEPIN
GTISLPTELEEQGIGRFDWNATPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKH
HVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKAPMHTRQQSQRRVTFH
LPDGSQESCSDSGLGEHEPVGSGPLLTQPLPLVQAQDDFYEQASPDKRTEADGNSDPNSD
GPLGPRGLMEASEMCTQECLVLGHSDNCWMPPTLASYQQHKSPVSSFGSQREWGPKEKLL
NGHTLTRTWKKENGQSEHFGDRKQFGSEEGHYTSSGMADIPLVSLKSCQSASCPDSPKDQ
QL
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggatctaaaagactattacctgttgggtgccctgcttgcttgcatatggttagatcct
tcaatagcccaagaactcatctaccccatcagggaggagctgcaagaaaatgtcctcatt
ggaaatataccgagggaccttaacatttcccatacaaatgctgccactggagcaagttct
aatcttgtgtaccggctggtctccaaagctggagataaccctctggtccgagttctgagc
agcaccggtgagatattcacaacatcaaaccgaatagatagggagaagttatgccctggt
ccctcctttgaggacagcgagtgctcctttgaaattgaagtggtcatcctgcctaatgat
tatttcaggctgattaaaatcaaaataattgtcagagacacaaatgataatgcacccatg
ttcccatcccctgtgatcaacatctccataccagagaacacgctcattaacagtcgcttt
gctattccgtcggccactgacccagacactggtccaaacagcgtccacaaatatgagctt
atcaatgggcagagtgcctttggcttagacatagtggaaacgcctgagggggagaagtgg
ccccagctcattgtgcagcagaatctggacagagagcagaaggatacgtatgtgatgaag
attaaagtggaggacggtggtagcccacagaaatccagcactgccattctccaagtgaca
gtaacagatgtcaacgataacagacctgtctttaaagagagccaggtagaggtgcatatt
ccggagaattcccctcttggcacatctgttgttcagcttcaggccacagatgcagatgta
ggggccaatgcagagattcgatatgtatttgggactcaggtgtccccgactacaaaaagg
ctctttgcgctgaacacgacatctggcttaattactgtgcagaggcccctggacagagaa
gagactgcaatacataagctctctgttgtggctagtgatggcagcccaagcgtcgccaga
gctattgtctcaataaatgtgactgatgtgaatgacaaccccccaaatatagacttgaga
tatataataagtcccattaatggcactgttttcctctctgagaaggatcccattaatacc
aagatagccctcatcacagtgtcagacaaagacactgacattaacggcaaggtcatttgc
ttcatcgagaaagatgtgcccttccatctcaaagctgtgtatgacaaccagtatctgttg
gagacatctgcactgcttgactatgaagggaccaaggaatataacttcaaaattgtggct
tctgattctggaaagccgagcttaaatcagactgccttagtgagagtgaggctggaggat
gagaatgacaactcgcctattttcactcaacccgtcattgagctggctgtcatggagaac
aacaaacgggacctgttcctgaccactcttagtgccacggatgaggacagcgggaaaaat
gcagagatcgtttatcagctgggaccaaatgcatcattctttgaccttgatcgcaaaaca
ggggttctgactgcatccagagtttttgaccgtgaggatcaagacaagttcctgttcacg
ataacggcaagagataatgggacaccacccctgcagacacaagcagctgtcattgtgact
gtgttggatgaaaatgacaacaacccaaagtttacacataaccactttcagttttttgta
tctgagaatcttcctaaatacagcacagtcggggtaataacagtgacagattctgatgct
ggagaaaatgctgccgtttctctttcaatactgaacgacaatgaaaacttcatattggat
cctttctccggcgttataaagtcaaacgtgtcatttgatcgagagcaacagagttcatac
acttttgatgtcagggctgtggacagtggcaggcctccttgctcttcagctgccaaggtg
accatcaatgtcattgatgtgaacgacaacacccccgttgtcatctcacccccctctaac
acatcttttaagctcgtccctctgtcctccatccctggatctgtagttgcggaggtgttt
gctgtagatggcgatacagggatgaacgctgaactgaaatacactattgtgcatggcaac
aacaagggtctgttcaggattgacccagtcaccgggaacatcaccctggaagaaaagcca
gcactgagtgacataggattacaccgattagtggtcaacatcagtgatttaggatatcca
aagtccctccataccctcgtgctggtattcctttatgtcaatgatactgtgggcaactac
actcttatcaatgatctcatccgccgtagaatggaaaccccgatcgagcgcaatatcagc
gaaagcagtgaaatttatcaaagtggggactatttaacaataatgatagcctttgtgact
ggcgccttagttgtgattattgtcatctttgtgactgtcctgctgcgctgccggcacacc
tccagattcaaagctgcacagagaaaaaaacaggggaccgagtggatgtcaccaaataca
gagaacaagcaaaataagaagaaaaagcgcaggaaaaggaaatctccaaagagctccttg
ctcaactttgttaccattgagggaaacaaacctgacgaccctgcccacgagccaatcaac
ggaaccataagtctgcccaccgaactggaagagcaggggattggacggtttgattggaat
gccacacctacgaccacctttaaaccaagcagccctgacctggcccgacactacaaatct
gcctccccgcaatcagcgttccacctcaaggctgacacaccggtctcagtgaagaagcat
catgtgattcaggaactgccactggataacacctttgttgggggctgtgacaccctttcc
aagcggtcctccacaagctccgaccacttcagtgcctcagaatgcagctcccaaggaggg
ttcaagacaaaggcgcccatgcacaccagacagcagtcgcagcgacgtgtcacgtttcac
ctgccggacggctcccaggagagctgcagtgacagcggtctgggggagcacgagcctgta
ggcagtggccccctcctcacacaacctctccctctggtgcaggcccaagacgacttctat
gagcaggcctcccccgacaagagaaccgaagcagatggcaactccgatcccaattctgat
ggccccctcggaccacgtggcctcatggaggcatcagagatgtgcacacaagaatgcctg
gtcctgggacattcagacaactgctggatgcccccaactttggcatcctaccagcagcac
aaatcacccgtgtccagttttggatcacaaagagagtggggccccaaggaaaaactcctc
aatggacataccttgactagaacctggaaaaaggagaacgggcagtcagagcattttggt
gacaggaagcaatttgggagcgaagaaggacactacacaagcagcggcatggctgatatt
ccgttggtaagtttgaaatcctgccagtcagcttcctgcccagacagccccaaggaccag
cagctttaa
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