Syngnathoides biaculeatus (alligator pipefish): 133498408
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Entry
133498408 CDS
T09681
Symbol
hcn4
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
KO
K04957
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sbia04040
]
133498408 (hcn4)
Ion channels [BR:
sbia04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
133498408 (hcn4)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
LPD1
Motif
Other DBs
NCBI-GeneID:
133498408
NCBI-ProteinID:
XP_061671163
LinkDB
All DBs
Position
3:16729063..16847285
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AA seq
1515 aa
AA seq
DB search
MDRLHSSMRKRLYSLPQHIGHKPSIMGDGEDADTDTRRKSIRMKPLPSPTSGGSCRGIGE
TKSGESLIMETDIGRPMKTSSNGDCRRFRGSLSSITSRHVHDSDSTEERRLITEGDVTPS
EESPPGAIGEGATEQGAQGAGGGGASTGGDDGAPPRESQPDDPTGFIKLDGMDQILPDDE
RLYQAGFMHRQFGAMLQPGVNKFSLRMFGSEKAVEREQERVKSAGFWIIHPYSDFRFYWD
LTMLLLMVGNLIIIPVGITFFKDEHTPPWIVFNVVSDTFFLLDLVLNFRTGIVKEDNTEI
ILDPQQIKIKYLRSWFVVDFISSIPVDYIFLIVETRIDSDFYKTARALRIVRFTKILSLL
RLLRLSRLIRYIHQWEEIFHMTYDLASAMVRIVNLIGMMLLLCHWDGCLQFLVPMLQDFP
ADCWVSKNKMVNDTWGQQYSYALFKAMSHMLCIGYGMYPPVGMTDVWLTILSMIVGATCY
AMFVGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQRIHDYYEHRYQGKMFDE
ESILGELNEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLKFEVFQPGDYIIREG
TIGKKMYFIQHGVVSVLTKGSKETKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSV
DNFNEVLEEYPMMRRAFETVALDRLDRIGKKNSILQHKVQHDLSSGVLNYQENEIIQQIV
QHDRDMAHCAHLLQNAPPQTPPSPTPVIWAPLIQAPLQAAAATTSVAIALTHHPHLPPTL
FRPPVSMLGSLKDPPSRQKKFHIFGPSSPAPGSAGDSPASTPLKRRTGVDMSLLTSFQAQ
HVASGSETTSVSQQGSGSHRRLNETKSGFNGSGSSALPRRPYTSSSSPSSSLAQLHSQPQ
HQQPFRSTTPPLSNFFHQVSTGESTGSGLSGSAVGACGGATDWPSGGAVGGSLEGATGGD
GGWASEDFMTAAMEVGSLKHFRLGAASSGLVGGISGESLVGVSEGSEGGACGRSAAVVSC
GIGCASVADSATKSLGSVSLASTGRASGELHIGMTTGGSFGRSSHGSLEGNSGELMLSTT
TAGSLGMASVESVGETSGELLVSTTAGGSLGRTSRGSVGVPSEKLLVAVTNSGSLGRPSI
GSKISAGLTGGVTVGPLIGVCSDSPIANPGGGSLGKASSGNTASYIGVGSSVPGAGGIAA
HKTRSIEGTVGGHTPSGPSGGTSSGTAEGLTSSSHCQSPISTGCSSPMPGQLLYSHPHPK
PPQVTPLQQFTGGGRTTSGLNLFHSPLHGSPSSSKGKNGTHPTVGSPSSLGHFSLTGLQS
GILPHQISLERSALASLAQYGSANASPCLTPVAPSPTIQSPVQSRTFHFNDPPSSTGSHS
FLLMPQSSLPSNPSVHTHTASRESQSGRFSEDLKLLSSSHPSLRQEVAQALGHQTVGSAV
EMGYYSSPFSSPTLKPKACSSVSGHITPPIHHSPGHPQQTHSPGASPSPSLRRGSSPYSS
DPETQAVRSKLPSNL
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atggacaggttgcattcgtccatgcgtaaacggctctacagtttgccccagcacattgga
cacaaaccgtccatcatgggcgatggagaagacgcagacacggacacgcggaggaagagc
atccggatgaagccgttgccgtcgcccacctccggtggaagctgcagaggtatcggggag
accaagagcggcgagtcgctcatcatggagaccgacattgggagaccgatgaagaccagc
tccaacggagactgccggaggttccggggtagcctctcgtccattaccagccgccatgtg
cacgactccgactcgacagaggagaggcgcctcatcaccgagggggacgtcaccccgagc
gaagagagcccgccgggagcgatcggtgagggcgccacggagcaaggtgcgcaaggggcc
ggcggaggtggcgcttccacaggcggcgacgacggcgcacctccgcgggagtcccaacca
gacgacccgaccggcttcataaagttggatggaatggatcagatcctgcctgacgatgag
cgcttgtaccaggccggcttcatgcaccgacagttcggagccatgctccagcctggggtc
aacaagttctccctgaggatgtttggaagcgagaaagcggtggagcgggagcaggagcgg
gtcaaatctgccggcttttggattattcacccctacagcgatttcaggttttactgggac
ttgactatgctcctcttgatggtgggcaaccttatcatcatcccagtaggcatcaccttc
ttcaaagatgagcacacaccaccctggatcgtcttcaacgtggtgtccgacaccttcttc
ctcttggacctcgtgcttaacttccggacgggcattgtcaaggaggacaacacggagata
atcctggacccgcaacagatcaagatcaagtatcttcgcagctggttcgtggtcgacttc
atctcttccattccagtggactacattttcctcatcgtggagacacgcattgactctgac
ttctacaagacagcacgcgccttgcgaattgtccgcttcaccaagatcctgagcttgctt
cgactcctacgcctctccagactgattcggtacatccaccaatgggaagagatcttccac
atgacctacgacctggccagcgccatggtaaggatcgtcaaccttatcggcatgatgctg
ctcctttgccactgggatggctgcctgcagttcttggtgccgatgctgcaggacttccct
gctgattgctgggtgtccaaaaataaaatggtgaacgacacgtggggacagcagtactcc
tacgcgctgtttaaagccatgagccacatgctgtgcatcggctacggcatgtacccaccg
gtgggcatgaccgacgtatggctgaccatcctcagtatgattgtgggcgccacgtgctac
gccatgtttgtgggccacgccactgctctcatccagtcgctggactcgtcacggcggcaa
taccaggagaagtacaagcaagtggagcagtacatgtccttccacaagctgccagcagat
atgaggcagaggatccacgactattacgagcaccgctaccagggcaagatgttcgacgag
gagagcatcttaggggagctgaacgagccactccgagaggaaatcatcaactttaactgt
cggaaactggtggcctccatgccgctgtttgctaacgccgaccctaattttgtgacctcc
atgctcaccaagctcaaatttgaggtgttccagccaggggactacatcatcagggaaggc
accattggcaaaaagatgtatttcatccagcacggggtggtcagcgtgctcaccaaaggc
agtaaagagaccaagctgtcggacggctcttactttggcgaaatttgcttgctgacccgc
ggcagacggacagccagcgtgcgagccgacacgtactgtcgtctgtactcactgtcggtg
gataacttcaacgaggtcctagaagaatatcctatgatgcgacgggcctttgagacggtt
gccctggacagactggacaggattggcaagaaaaactccatcctgcagcataaagtgcag
cacgacctcagttcgggtgtcctcaactaccaggaaaatgaaatcatccaacaaattgtt
cagcacgacagggacatggcccattgtgcccaccttctgcagaacgcccctccccagacg
ccaccttctcccacgcctgtcatctgggccccattaattcaggcgcctctccaggcggcg
gcagccaccacctctgtggccatcgctctcacacaccatccccacctcccgccgactctc
ttcaggcctccggtttcaatgctggggtccctgaaggatccccccagtcggcaaaagaag
ttccacatttttggtccatcatcaccagctcctggttctgctggggattctcctgctagc
acacctttgaaaagacgtaccggggtggacatgtccttactgacctcttttcaggctcag
catgtggcatcaggttcagaaactactagcgtgagtcaacagggttcaggtagtcaccgt
agactaaatgagaccaagtcagggtttaatgggagcgggtcctcggcacttcctcgcaga
ccatacacatcgtcttcttcgccatcatcaagtctggctcagctgcactcacaaccacaa
catcagcagccttttcgatccaccaccccacctttgtccaatttcttccaccaagtatca
acaggagagagcacagggtcgggtttaagcggaagcgcagtcggtgcctgtggcggtgca
acagactggccttcggggggagcagtaggggggtctttggaaggggcgaccggaggtgat
ggtggatgggccagcgaggactttatgactgcagcaatggaagtgggctcactgaaacac
tttaggttgggggcagcttctagtggattggtgggtggtatctcaggggaatcattggta
ggggtttctgaaggatctgagggtggtgcttgtggaagatcagcagcagtggtctcttgt
ggtattggctgtgcatcagtagcagattcagccacaaaatctttgggaagtgtctcactt
gcatcaacaggaagggcttcaggagaattacacatagggatgaccactggtggttcattc
gggaggtcttctcatggttcattggaagggaactctggagaattaatgctgtcaaccact
acagcaggatcattaggaatggcttctgttgagtcagtgggagagacctctggggagtta
cttgtctcgacaactgctggaggatcattggggaggacatcccgagggtcagttggtgtg
ccttctgaaaaattacttgtagcagtgaccaacagtggatcgttagggcgcccctctatt
ggatcaaagatttctgcaggattgactggaggagtaaccgtgggtcccctcatcggagtt
tgtagtgattctccgatagcaaatcctggaggaggatctctgggaaaggcttccagtgga
aatactgctagctatatcggggtaggttcaagtgtgccaggggcaggggggattgcagca
cataaaaccaggtcaatagagggcacagtagggggccatacaccaagtggcccttcaggg
ggtacctctagtggtactgcagaaggacttacatcttcttcacattgtcagagcccaata
tctactggctgttctagccccatgccaggacagcttctttacagtcatccacaccccaag
cctcctcaagtgacccctttgcagcaatttactggaggaggcaggactacaagtggcctg
aacctcttccactcacctctgcatggctccccatcttcaagtaaagggaaaaatggtaca
catcccactgtgggctcaccatcatcccttgggcattttagtctgacaggtcttcagtct
ggaatccttccacatcagatttctttggagaggtctgccttggcttcgctcgcccaatat
ggctcagccaacgcctccccatgccttactccggtggcaccaagcccaactattcaaagc
cctgttcaaagcaggacttttcacttcaacgacccgcccagttccacaggatcccacagt
tttctcctcatgcctcaatcctctctaccttcaaatccatcagtccatacacacactgca
tcaagagagtctcagtctggtcgcttttctgaggatctaaagctgttatctagctcgcac
ccatctcttcgccaggaggttgcccaggcgttaggccaccaaactgttggttccgcggtg
gaaatgggttattattcctcacccttttcttcacccactctaaaacccaaagcctgtagc
tcagtttccggtcatattactcctccaatccaccattctccaggccacccccaacagact
cattcacccggagcctcgccgtccccgtcgctccggaggggctcttcaccctattcatca
gatccagaaactcaagctgtccgctcaaagcttccctccaatttgtga
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