Syngnathoides biaculeatus (alligator pipefish): 133498433
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Entry
133498433 CDS
T09681
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03420
Nucleotide excision repair
sbia04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133498433 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
133498433 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbia04121
]
133498433 (ddb1)
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133498433 (ddb1)
Ubiquitin system [BR:
sbia04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
133498433 (ddb1)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
133498433 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
133498433 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
133498433
NCBI-ProteinID:
XP_061671224
LinkDB
All DBs
Position
3:29609667..29674538
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFKPKGENKDLLFILTSKYNACILEYKQNGDSVDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCL
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESISYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVGLKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSETGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QDSKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILSGELKQISNTDMEHEVAC
LDITPLGEGGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGTLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEFSQCFGVLSSRVEIQDVSGTTSVVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGDEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTDQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacaactacgtggttacagctcaaaaacccacggcggtcaatgcctgcatcaca
ggccacttcacctctgcagaggaccttaatttgctaatagcaaaaaacacaaggttggag
atctacgttgtcactgctgaaggactcagacctgtcaaggaagtgggcatgtatggcaag
attgctgtcatggagctctttaagcccaagggtgagaacaaggatctgctatttattctc
acatcaaagtacaatgcgtgtatccttgaatacaaacagaatggcgacagcgttgacatc
atcactcgtgcccatgggaatgtccaggatcgaattgggcggccctcagagactggtatt
attggaattgttgaccctgaatgccgtatgattggcctgcggctatatgatggattgttt
aaggtgatccctttggaccgggacaatcgtgagcttaaggccttcaacatcagacttgag
gagctgcaagttattgatgtccacttcctgtatggctgccaggccccaaccgtgtgcctc
atctatcaggacccccaagggcgccatgtcaagacatacgaggtttctctgagggaaaag
gagttcaataagggcccctggaaacaggagaatgtcgaggcagaagcttcaatggtcata
ccagtgccagaacctttcggtggtgctataatcataggacaagaatcaatttcttaccac
aatggagacaaatatttggcgattgcaccacccactatcaagcaaagcactattgtctgt
cacaaccgagtggacccgaatggatcacgctacctgctgggagacatggaagggcgcctt
ttcatgttgcttctggaaaaagaggagctaatggatggaacggttggcctcaaagacttg
catgtggagttgttaggagagacatccattgctgagtgtttaacgtacttggataacggt
gtggtctttgtgggctccagactcggtgactcccaactggtaaagctcaacgttgacagc
aatgaccagggctcatatgtggctgtcatggagacgttcactaatctggggcccatagtg
gatatgtgtgtggtagacctggagaggcaaggccaaggccagctggttacatgttcaggt
gcattcaaagaaggctctcttcggatcatccgcaacggtattgggattcatgagcatgcc
agcattgacctgccaggaatcaaaggtctgtggcctctgcgctcagagacgggaagagag
acagatgacatgctggtactgtctttcgtaggtcaaacacgtgtgctgatgctgagtggt
gaggaggttgaggagacagaacttccaggctttgtagacaatcagcagacattttattgt
ggcaatgttgcacaccagcagctcattcagatcacgtctggctctgttcgcttggtgctt
caggacagcaaagcattagtgagtgaatggaaggagccacaaggcagaaacatcagtgtg
gctgcttgcaaccacactcaggtggtgcttgctgtaggccgtgccctttactatcttcag
atcctgtctggagagctcaaacagatcagcaatacagatatggaacatgaggtggcctgc
cttgacatcacaccactgggggaaggtggtggcgaatcaccgctctgcgctgtggggctg
tggactgacatttcagcccgtgttctgaaactcccctgcttcactgcccttcacaaggaa
atgctcggtggagagatcatccctcgctccatcctaatgaccacttttgaaggcagctac
tacttgctgtgtgcccttggtgacggtgctctcttctactttggtctggatctgcagaca
ggaaccctgagtgagcgcaagaaagtcaccctaggcactcaacccacagtgctcagaacc
tttcgatccctgtccacctccaatgtctttgcctgctctgaccggcccactgtaatttat
tcttccaaccacaagctggtgttttcgaacgtgaacctcaaggaggtcaactatatgtgc
ccactcaactcagaaggctatcctgacagtctggctctggcaaacaacagcactctgacc
attggtaccattgatgagattcagaaacttcacatccgtactgttcctctctatgaatca
cccaggcggatctgttaccaggagttttcacagtgttttggggttctatccagccgagtg
gagattcaagatgtgagtggtacgacctctgttgtacgacccagtgcaagcacccaggct
ctctccagcagcgtgagctctagtaagctcttccccagcagcacgtctccccatgagaca
tcttttggcgacgaggtagaggttcacagtctgctcgtcgtggatcagcacacctttgaa
gtgcttcatgcccatcagttcctgccaagtgaatatgccctcagcatggtgtcctgccga
ttgggaaaagacccatcagtctacttcatcgtaggcactgccatggtctacccagaggag
gctgagcccaagcagggacgtataattgtcttccactacactgatggaaagctacaaact
gtagcagaaaaggaggtgaaaggagctgtctactcaatggttgagttcaatggcaaactc
ttagccagtatcaatagcacggtccgcctgtatgagtggacagccgagaaagagcttcgg
accgagtgcaaccactataacaacattatggcgctttatctcaagaccaaaggagatttt
atcttggtgggagatttgatgaggtctgtcttgttgctggcatataaacccatggagggt
aactttgaggagatcgctcgggacttcaatcccaactggatgagtgcagtggaaatcctg
gacgatgacaacttcctcggggcagaaaatgcctttaatctgtttgtttgccagaaggac
agtgcggccaccacagacgaggagcgtcagcacctccaggaagtggggctcttccacctt
ggagaatttgttaacgtcttctgccatggctcgctggtactacaaaacctgggagaaagt
tccacgcccacccaagggtctgttctgtttggaacagtcaatggcatgattggactggtg
acctccctgtctgagggatggtacagtcttctcctggaccttcaaaaccgtctcaacaaa
gtaatcaagagtgtggggaagattgaacacagtttctggaggtccttccacacggagcga
aagactgatcaagccacgggattcatcgatggtgatctgattgagagtttcctggatcta
ggcagagccaagatgcaagaggttgtcagtacacttcagatcgatgacggcagcggtatg
aagcgtgaagccacggtggacgaggtcattaagattgtcgaggagctgacaaggatccac
tag
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integrated database retrieval system
