Syngnathoides biaculeatus (alligator pipefish): 133498789
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Entry
133498789 CDS
T09681
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbia04131
]
133498789 (vps13a)
Membrane trafficking [BR:
sbia04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
133498789 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
133498789
NCBI-ProteinID:
XP_061671890
LinkDB
All DBs
Position
4:complement(27384928..27448423)
Genome browser
AA seq
3249 aa
AA seq
DB search
MVFESVVVDVLNRFLGGYVVNLDSSQLKLGIWGGDAALTNLEIKENALSQLDIPFKVRAG
HIGRLQLQIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKVAEQDNPTAEKQDTFVEKLVTQIIKNVQVKISNIHIRYEDDVTNPRCPLSFGVSLS
NLSLQTCDEDWKPTVLDENARLFYKLVQLDKLFAYWNVNSVLFSNHSPEKALHCLKNSLA
LKGSCHSDHDFILHPISAGAKLCMNPKSDVDFSSPKVDFMVNLSEVAIELNRPQYISILE
LLGSVDLMSRNLPYRKYRPEVLVHNNANIWWAYAITSILEVDVKPRLRMWSWHHIQRHRK
LVKHYRELYKIKITTKKPSEELLKDLQEPEKTLDIFNITLARQQAEVEASKAGLRIYRPG
LKMEEEQSQGWMSWMWNWGADPDTEPKEVKTTGGGFDELLTSDEKSRLYAAIGYSETAAN
FIYPKEFEDMRVDFHMEKLSVSIKDSKDKDEIVKLTVGELMSSLTQRSGAQAIKFTAQLS
LFEITGLAGNRSAPTLLSSKTVGTVTGTPLLSLFFETNPLDQSVNQRFFAESQPLEIIYD
AMTVNAMSAFFRPPDDLELDELTNATLIKLEQFRDRTATGLMYVIETQKVLDLKVNLLAS
YIIIPQTGFYDGSQNILLLDLGHLQMSSQSKKHLPQLSAGSSKIEDIMLRAYDSFDIQLN
NLQFIYSKPDNDWKMARKQRQSPLHILEPVDLKMEFSRAMVVKDSRMAKYKLSGELPLLS
LRISDIKLRNVLELVDSIPLPKSSPSPANSSVPTHSKPKQFTPQLSTRRHLPLADQRSSL
IFESCETISLTSLGSEEDLFYDAPSSPITGQQFFPDSPVPLRYADLNRQKNLAQEERLKN
MTDFLMTFEISEFSVQLCRLTGSCQEVVVLHLDVEGLGTELKMRTFDLTSNTYLKEICLK
CPEYKDSESREIHLITTLDNAEVDMLTLEYTKAEKNSPEFKSLHNNTEQLIKVTFSSLDV
NLHTEALLNTMNYLSNLLPQSTKNEENEQEELPTIPEVEELEEDKEEEEAAVAKRKTPKN
SKAPAIINLHIRADLRSLKVYIRGQNTRISEIRIEGLVSEVLMRKREMKVLANLKNIIVF
DCDETAVYKKAVSIADREVFAFQMVNYTDATEGDSYLDMSQVDTSVTLTVGCIQVIFLNK
FMSSILTFINNFQEAKEAVAEVTQQAAEKAASGVKELSERSTRISLNIHFKAPVIFVPQS
SSSSNVLVADLGFLSVKNHFALQPSKSYRKIPPMVDIMEVKLTDLKMYRTTFINGVFQGE
SNLLQPISLEVEVQRNLSSKWYHTIPDIEITAHLMPLNLILSQDDMVVVFKTLSENLTEN
SDTATASAPAPTEDSTSDLAPRSSGSTDKGISSSNTVVTAAVVETQKSIRLKTNMKLDFK
IDSMALILFKPAGKELSFLQPHDDELKLGEFTLGTISSSITMYSDSSMKAAVRLSTCLLD
DKRPNIKTISPRMMAMRPGTENNMMVEVNYRQSHEGTTLDTIVQDVYLCASMEFLLTVVD
IFLNATKEGFTETPQTTNNPVSGDKNNIPAEPKESVPAAANVSKSEINVVVRNPEIVFVA
DLTRADALALVMTTHCELNMKNDAESSMMTAVIQDLKVVACPFLREKRVHNVTTVLQPCQ
VFFQSAQSPTSPQDMEISINSLSFKVSPIIIKTVITIQSVLTPTQETTEMLETPVPVDMW
SKRDWKDLKLWFLEEQGEAKAQEAALLIPQGESLKLDIKSICVTLEAGVGHRTVPMLLAK
SSFQGDVKNWSTLINLQSELNLEVHYYNEVVGVWEPLLEPLEDETRDGFRPWQLEFKMKT
KPLKNIEWADEVDYSVPDYKTVMMISSKDQLNITLSKCGLAMLSNLGMAFANAAKETTGC
FQKDEPPFVVKNRLGLPVSVQLSDMFSPVTIHSNDHTIELQDGQTLGMDYSVTTESDQFS
AMISLSEKDYYIQPTPAGHTSTSIIPLIKVGRRMYSVMHEVSGVTRFLVCQVYSVDSSKY
IKIRSPFQIINHFSIPFKVFEGSTYLGTSLPTEEFCVPLDSYRSELNLQPVTGDDGDQFE
CSEGFSYDDINLQQPKMHIQQRCHQRGNPGRVLTVNIVPVKDTVTFKDMGGVGDNFDVPF
VLHLWPCVLLRNLLPYPITYKLNDSSAFTPESTLDPGHSAQLHTGVINQSTLDFRLIDYF
AQDWSAQYSLRSEQEEITFIVFESLRVEEEDHYSDGVARQRAELDIAVHVKYDQGQTVVA
IHSPYWMVNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRYFLKNNKVRLMISESEHSD
DFSLDTVGSYGDVKCKGQYKDYLVGVKIDTTSFSLTRIVTFMPFYMLVNRTKQTVLVCEE
GQENWTAVPPEQSTIPFWPENDAKLLQVKTEGCQYPPRTINFTRPENCLLLHLDNTVGGI
IVDVNVSEHSATIRFSDYHDGAAPFLIINHTKEQVLQFYQSSNKATEVEEVEAGKAVHYT
WTEPTGSRELCWRCGKYSGKLKSEEDLHEDIGKEGKLFVISFYEGLQRVVLFTEELRIYR
LLCQSEKAQLAKQEIILSLYNVGVSLVNNSSGQEVSFIGITSSDVVWELKPKKKNRWKPL
TTNAAEILERRFKEYIDSGATDKAIVHLDNSFQVCLSPNATDMRMLQPCEALLRRHFLPG
VKVEYSVSPRQSSYRVQIHHIQIQNQLPGAIFPYVFYPVKLPKSITMDAEPKPLTDISIV
TRAAGHSNISRIKYFKVLIQEMDLKLDLGFLYAVLDLFSPENASPTSVQQEVELFEKDVE
YMKTELNHVSTADTTAISLYEYFHISPIKLHLSFSLSTGGEDGLKEKRETELIPVQSLNL
LLKSIGATLTDVQDVVFKLAFFELTFQFCTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVL
GNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRITG
AMAKGMAAMTMDEEYQQKRREAMNKQPSSLREGLTRGGKGLVSGFVSGITGIVTKPIEGA
QKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDIESLRPPRFIHED
GVIRPYRQREGIGSQMLQKIENGRFAKYRYFAHAKVNDSDFLMITKRGIFFVTTGTFGQL
ICEWQYLFDEFTKEPTIVENRRLRIEAKERVKSVFHAKEFGKIINFKTPEIATWVLAKLE
DARDTLPKY
NT seq
9750 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtagtggtagacgtcctcaacaggtttctgggcggctacgttgtc
aatcttgacagctcgcagcttaaactcggcatctggggaggtgatgcagcacttacaaat
cttgaaattaaggagaatgctttgagtcagcttgacattcccttcaaagtgagagcggga
cacataggacgcctgcaactccagattccgtggaagaacctttatacccaatccgtggag
gccacactagatggcgtctatctgctcattgtgccaacagcaagtatcaagtatgatgcg
gaaaaggaggaaaagcagttgcaggaggcgcgacagagagagctgcaaaggattgaggag
accaagctgaaggtcgctgagcaagacaaccctacggcggagaagcaggacacttttgtg
gagaagctcgtgactcaaatcatcaaaaatgttcaagtcaagatctccaatattcatatt
cgctatgaggatgatgtcaccaatccgcgttgccctttgtcctttggtgtgtctcttagc
aaccttagccttcagacttgtgacgaggactggaagccgactgtcttggatgagaatgca
agacttttctacaagttggttcaactggacaaattgtttgcctactggaatgtcaactcg
gtgcttttctctaatcacagtccagaaaaggctttgcattgtctcaagaatagcctggct
cttaaaggctcctgtcattccgaccatgatttcattttgcatcccatctcggctggagca
aagctttgcatgaatcctaagtcagacgtggatttctcatctcctaaagtggacttcatg
gtcaatctcagtgaggtggccattgagcttaatcgaccccagtacatcagcatcctggag
ctattgggttcagtggatttaatgtcacgtaatctaccatacaggaagtacagacctgag
gtcttggttcataacaatgccaacatttggtgggcctatgccatcacaagcatcttggag
gtggacgtcaagccccgtctccgcatgtggtcatggcaccacattcagcggcaccgcaag
ctggtgaagcactaccgcgagctctacaagatcaagatcaccaccaagaaacccagcgag
gagctactcaaggacctgcaggagcctgagaagacattggatatttttaacatcactcta
gcaagacagcaggctgaagtggaggcaagtaaagctgggctgcgtatttaccgcccaggc
ttgaaaatggaggaagagcagtctcaagggtggatgagctggatgtggaactggggtgca
gatcctgacactgaaccaaaggaggtcaagaccacaggaggagggtttgatgagctgtta
acttctgatgagaaatccagactgtacgctgccatcggatacagtgagactgctgccaat
ttcatttatccaaaggaatttgaggacatgagggttgatttccacatggaaaagctaagt
gtttccatcaaagacagcaaggacaaagatgagattgtcaaactgactgttggagagctg
atgtcctccctgacacagagatctggagctcaagccattaaattcacagctcagctcagt
ttgttcgagatcacaggtctggcaggtaaccggtctgctcccaccctgctctcatccaag
accgtcggtactgtaacgggaaccccgctcctcagtctgtttttcgagactaaccctctg
gatcagagtgtcaatcagcggttctttgctgaatctcaaccgctggaaataatctatgat
gctatgacagtgaacgccatgtcggcattcttcaggccacctgacgacctggagttggac
gaactcacaaatgcaaccctgataaaactggagcagttccgagaccgcacagccactggt
ctaatgtatgtgattgagacgcagaaggtgttggacctgaaagtgaaccttttggcgtcc
tacatcatcattccccagaccggtttttatgacggctctcagaacatcctgctgctggat
ctcggacacttgcagatgtccagtcagagcaaaaagcaccttcctcagctgtctgcaggc
tccagcaaaatcgaagacatcatgctgagagcttatgacagcttcgacatccagctcaac
aacctgcaatttatttatagtaaaccagacaatgactggaaaatggctcgtaaacagagg
cagtcgcccctccacatcctggagccggtggatttaaaaatggagttcagcagggccatg
gtagtcaaggactcgcgcatggcaaaatataagctgtctggagagctccctctgctctcc
ctccgaatctccgacattaaactcagaaatgttctagagctggtggacagtatcccactg
ccgaagtcaagtccttccccggctaactccagtgtgcccacacattcaaagcccaaacag
ttcacaccacagctgtccacaaggagacatctgccgttagccgaccagcgctcctctctg
attttcgagtcatgtgaaactattagtcttacttcactagggtctgaagaagatttattc
tacgatgcccccagctctcccatcacagggcagcaattcttccccgacagtcccgtgccg
ctgcgctatgctgacctgaacagacaaaagaatctcgcccaggaggagcgtctgaagaac
atgaccgactttctcatgacatttgaaatcagtgagttctctgtccagttgtgtcgccta
actggtagctgtcaggaagtggtggtgctccacttggatgtggagggccttggcaccgag
ctgaaaatgcgtacgttcgacctgacgtccaacacttatctcaaggagatctgcctcaag
tgtcctgaatacaaagattccgaaagcagagaaatccatctgatcactactttggataac
gcagaggttgacatgcttactctggagtatacaaaagctgaaaagaacagtcctgaattc
aagtccttgcacaacaacacagaacagctaataaaggtgaccttctcatcgctggatgtt
aatctccatacggaggcgctcctcaacaccatgaactacctcagtaatctgctgccacag
tccaccaaaaatgaggagaatgagcaggaggagctccccaccatcccagaggtggaggaa
ctggaggaggataaggaggaggaggaggctgctgttgccaaaagaaaaacaccaaagaat
tccaaggccccagctatcatcaatctgcacatcagagccgatctccgctctctgaaggtt
tatattcgagggcaaaataccaggatctcggagatcagaatcgaaggcctggtgtctgag
gttctgatgaggaagagagagatgaaagtcctggccaatctgaagaacatcattgtcttt
gattgtgacgaaactgctgtctataaaaaggctgtgtcaatagcagatagggaggtattt
gccttccagatggtcaactacacggatgcaactgagggcgactcttaccttgacatgtct
caagttgacacctcggtcacattgactgtgggatgcatccaggtcatcttcctcaacaag
tttatgtcctccattctgacattcataaacaacttccaagaggccaaggaggctgtcgcc
gaggtgacccaacaggcagctgaaaaggcggcgtcaggcgtgaaggagttgtcggagcgc
agcacgcgcatctctctcaacatccatttcaaggcgcccgtcatctttgtcccacagtcg
tcctcatcatccaacgtcctggtggccgatctgggctttctctcagtcaagaatcatttt
gccttgcaaccctctaagagttaccgcaagatcccacccatggtggacattatggaagta
aaactcacagacctcaagatgtacagaacaacattcattaatggagtattccagggcgaa
agcaacttgttgcaaccaatcagcctggaagttgaggtccagaggaatctttcgtccaag
tggtaccacaccatccctgacatagagatcactgctcatcttatgcccttgaatttgatc
ctcagccaggatgacatggtggttgtcttcaagactctcagtgaaaacctcacagaaaat
tctgacactgctactgcctctgcaccagctcccactgaagactcgacgtccgacttggca
cctcgcagctccggaagcacagataaaggcatcagcagcagcaacacagtggtgacagca
gccgtagtggagactcagaagtccatcaggttgaagacgaacatgaaactagacttcaag
attgactccatggcactgatcctgtttaagcctgctggaaaggagctttcctttttgcag
ccacatgatgatgagctgaaattgggtgagttcaccctgggcaccatctcttcctccatc
accatgtactctgacagctctatgaaggccgctgttcgactgtccacctgcctccttgat
gacaagaggccaaatatcaagacgatcagcccgaggatgatggccatgcgtcccggaaca
gaaaataacatgatggtggaggtcaactaccggcagagccacgaaggcactaccttggac
acaatcgtacaggatgtgtacctctgcgctagcatggaattcctcctcactgtggtggac
atcttccttaatgccactaaggagggtttcactgagacaccacaaaccacaaataaccca
gtgtctggagataaaaacaacatacctgcagagccgaaggaatcagtccccgctgcagcc
aacgtttcaaagtctgagatcaacgttgttgtgcgtaacccggagattgtgttcgtggcc
gatctgacgcgcgccgatgccctggccctagtgatgaccacgcactgcgagttaaacatg
aaaaatgatgcagagagttcaatgatgactgccgtaatccaagaccttaaggtggtggcg
tgtccttttctgagggagaagagagttcataatgtgactacagttctgcagccatgccag
gtgttctttcagagtgctcagtcaccaacatctccacaagatatggagatctccatcaat
tctctctcattcaaggtttctcccatcatcatcaagacagtcattaccattcagtcagtc
ctgactcccacccaagagaccacagagatgctcgagactcctgttcctgtggacatgtgg
tctaaacgtgactggaaggatctgaaactgtggttcttagaggaacagggagaagcaaaa
gcacaagaagcagccctgctcatcccacagggggagtcacttaagttggacatcaaatca
atttgtgtgacgctggaggctggagtgggacaccgcactgtgcccatgcttctggcaaag
tcctccttccaaggagatgtcaaaaactggtccactcttatcaacttgcagagcgagcta
aatttggaggtccattactacaatgaggtggtgggagtgtgggagccgcttctggagcct
ttagaggatgagacaagagatggtttccgaccttggcaactcgaattcaagatgaaaacg
aagccattgaagaatattgagtgggctgatgaggtggactacagtgttccagactacaag
actgtcatgatgatcagcagcaaggatcagctcaacatcaccctttccaaatgtggtctt
gccatgctgagtaacctgggcatggcttttgccaacgctgccaaggagacaaccggatgt
ttccagaaggatgagcctccgtttgtggtgaagaaccgcctgggcctgcctgtttccgtc
cagttaagcgacatgttttcccccgtcacaatccacagtaacgaccacaccatcgagctg
caggatggccaaacactcgggatggactattctgtaaccactgagtcggaccagttctct
gctatgatctccctcagtgaaaaggactactacatacagccaactccagcgggccacacg
tcaactagcatcatccccttgatcaaggtgggacggagaatgtacagcgtcatgcacgag
gtgtcgggagtcacccgcttcctggtgtgtcaggtttattctgtggacagtagcaaatac
atcaagatccgctcacctttccagatcatcaatcatttctccatcccctttaaagtgttt
gaggggtcgacgtatttgggtacgtcgttaccgaccgaggagttctgtgtgcctctggac
tcatataggtccgagctgaaccttcagcccgtcacaggggatgatggtgaccagttcgag
tgctcggagggctttagctacgatgacatcaacctccagcagcccaagatgcatattcag
cagaggtgccaccagcgcggaaacccaggcagggttctgacagttaacatcgtgcctgtg
aaggacacggtgacgttcaaggacatgggtggcgtgggggacaactttgacgtgcccttt
gtgcttcacttgtggccttgtgtcctgctccggaatcttctgccttacccaatcacctac
aaacttaatgacagtagcgcatttaccccagagtccacgttggacccgggccactccgcc
cagcttcacactggcgtcatcaaccaatccaccctggactttcgcctgattgactacttc
gctcaagactggtctgctcaatacagcctgcgcagcgaacaggaagagatcactttcatt
gtgtttgagtcccttcgggtggaggaagaagatcactacagtgatggtgtggcgaggcag
cgggccgagctggacatagccgtgcatgtcaagtatgaccagggccagacagtggtggct
atccactcaccgtactggatggtgaacaagacgggaaggctgctgcagtacaaggcggac
gatatccaccgcaagcacccgttggactacgacatgccactgctcttctccttcaagcct
cgttatttcctgaaaaacaacaaggtccgtctcatgatctctgagagtgaacactccgat
gatttttccctcgacaccgttggcagctatggtgatgtgaaatgtaaaggccaatataaa
gattatctggtcggagtgaagattgacacgactagtttcagtctcactcgcatcgtgacc
ttcatgccgttctacatgctggtcaacagaactaagcagactgttttggtatgtgaggag
ggtcaggagaactggaccgcagtcccgcctgaacagtccacaattccgttctggcccgaa
aatgatgccaagcttctgcaagtgaaaaccgaaggctgtcagtacccgcctcgtactatc
aatttcacacgtccagaaaactgcttattgctccatttggacaacactgttggcgggatc
attgtagatgtcaacgtgtcagagcactcggccaccatccgattctctgactaccatgat
ggcgcagcaccgttcctcatcatcaaccacaccaaagagcaagtcttgcagttctatcag
agctctaataaggcaacagaggtagaggaagtggaggctgggaaagccgtgcactacact
tggaccgagcctacgggatcccgggagctttgctggaggtgcggcaaatacagtgggaaa
ctgaagagtgaagaggaccttcatgaagacatagggaaggaaggcaaactattcgtcatc
tccttttacgaaggtctccagcgcgtggtgctgttcaccgaagagctgcgcatctacagg
ttgctgtgccagagcgagaaggcacagttagccaagcaggaaatcattctgtcactttac
aatgtgggtgtgtccttggttaacaacagcagcggccaggaagtctctttcatcgggatc
accagttctgatgtggtgtgggagctgaagcccaagaaaaagaatcggtggaagcctctg
accaccaatgcagctgagattttggagagacgcttcaaagagtacatcgactctggagca
actgataaagccatcgtccacctcgacaacagtttccaggtgtgcttgtcccccaatgcc
acggatatgcggatgctgcagccatgcgaggctcttctcagaaggcatttcctgccaggt
gtcaaggtagagtacagtgtttcgccacgccagagctcctaccgggtccagatccaccac
attcagatccaaaatcagctccctggagccatctttccctacgttttttatccggtgaaa
cttccaaagtccatcaccatggatgcagaacccaagcctctgactgatatcagcattgtc
accagggcagcaggccactctaatatctcccgcatcaagtacttcaaagtgttgatccaa
gagatggatctgaaactagatctggggttcctctatgccgtcctggacctgtttagccca
gaaaatgccagccccacaagtgtccaacaagaggtggaattgtttgagaaggatgtcgag
tacatgaagacagagctgaaccacgtttccaccgctgatacaacggccattagtctgtac
gagtacttccacatttctcccatcaagctccacttgagtttctctctgagcacgggtggt
gaggatggcctgaaggagaagcgggaaacggagctcatacctgtccagtcgctcaacctg
ctgctcaagagcatcggcgcaacgctcactgacgtgcaggacgttgtcttcaagctggcc
ttctttgagttgaccttccagttctgcaccacccagcagctccagtgggaagtcatcagg
cattattccaaacaggcaatcaagcaaatgtacgtactggtgctaggcttggacgtcctg
ggaaatcccttcgggctgatcagagggctgtctgagggagttgaggccttcttctatgag
ccctatcagggagcaatccagggccccgaggaatttgtggaagggatggccctcggagtg
aaggctctggttggaggagctgtaggaggcatagctggcgccgcctccaggattacgggc
gctatggccaagggcatggccgccatgaccatggatgaagagtaccagcagaagaggcga
gaggcaatgaacaagcagcccagcagcctcagagagggtctcacccggggcgggaaagga
ttggtttctggattcgtcagtggaataaccggcatcgtcaccaaacccattgaaggagca
caaaaggaaggagcggcgggcttcttcaaaggcgtcgggaaaggcctggtgggggctgtc
gccaggcctaccgggggcataatagacatggcgagcagcactttccaaggcatcaagagg
gcggcagagacgtcgcaagacatcgaatccctacgcccccctcgcttcatccatgaagat
ggtgtcatacggccgtacaggcagagggagggcatcggaagccagatgcttcagaaaatc
gagaacggtcgttttgctaaataccgctactttgctcacgccaaagtcaacgactcggac
ttcctcatgatcaccaagaggggcattttcttcgtgacaacgggcactttcggccagctg
atctgcgagtggcagtacttgtttgacgagtttaccaaagagcccaccatcgtggagaac
agacggctacgcattgaggccaaggagcgagtcaagtcggtgttccacgccaaagaattc
ggcaagatcatcaactttaagacgcccgagattgccacgtgggttctggcaaaactggag
gacgccagggacactttacccaaatactga
DBGET
integrated database retrieval system
