Syngnathoides biaculeatus (alligator pipefish): 133498819
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Entry
133498819 CDS
T09681
Symbol
chfr
Name
(RefSeq) E3 ubiquitin-protein ligase CHFR isoform X1
KO
K10644
E3 ubiquitin-protein ligase CHFR [EC:
2.3.2.27
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbia04121
]
133498819 (chfr)
Enzymes [BR:
sbia01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133498819 (chfr)
Ubiquitin system [BR:
sbia04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133498819 (chfr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CRD
FHA
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-CCHH
zf-rbx1
zf-RING_6
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
133498819
NCBI-ProteinID:
XP_061671965
LinkDB
All DBs
Position
4:20223488..20240520
Genome browser
AA seq
689 aa
AA seq
DB search
MSTVILAGSAACSLLEHDDTLKFPTEILRQETRHLTVKVTDTSNPRFRSKYWEMDRHRRG
TPWGKLVKVDSSDAEVLLFNRECTIGRKKGCDLAFPANKLVSGEHCKIVQDENSGQVWLE
DMSTNGTVINMATLVKKQTHMLQNGDVIYFVYMKNEPEQNIAYVYHAIETEQGILQGHHD
SASSLTSPEMTLSVEPVMLTKAPRDLNQEEPQPSTSTSDLCFQLPFTPGPPSARACLNSA
GTQSRDVSEGPEKSPNILEPQCKKRKTETPLSSSTELTPPTLPSTRNLLVPAQAEETKTD
KMEESLTCIICQDLLYDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERIRKNHIFN
NLVEAYLNQHPEKCRSEEDMKSMDSRNKITQDILQPKVERCFSDEDGSSDYLFELSDNDS
DSSDMSLPPLLCRQCPGYRKDVNEMLFGNFATGSNCWVPCLPVPPPMPPSLSHPIKAAAD
ESSVKSIGLEPSTSSDNPSAPQDYCCQPLGCHLICTCCLQPMPDRRAEMNSQQYCVQCQR
PFCHIYWGCKRIGCQGCLARFSELNLTDRCLEGVLNNNNYESEILKNYLSSRGKTWRDLL
KEAFNDLQQGKYCLSNHHISANPILCICCGLVVFKEMAYKYRQNIPPAELPAAVLARPDC
YWGRNCRTQVKAHHAMKFNHICEQTRFKS
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagtgatcttagcaggaagtgctgcttgttccttgctagaacatgacgacacg
ctgaaattcccgacagaaatattgagacaagaaactcgtcatttgacggtaaaagtaaca
gacacaagtaaccccagatttcgttccaaatattgggagatggaccgtcacagaaggggt
acgccgtggggaaaactggtcaaagtggattccagtgacgccgaagtgctgcttttcaac
agagaatgcaccattggccgtaaaaaaggatgtgatttggcctttcctgccaataaactg
gtctcaggggagcactgcaagattgtgcaagatgaaaactcagggcaggtgtggcttgaa
gacatgagtaccaatggtacagtgatcaatatggccacactggtaaaaaaacaaactcac
atgcttcaaaatggggatgtcatctactttgtatacatgaaaaatgagcctgaacaaaat
attgcgtatgtttaccatgcaatcgaaacagagcaaggtattttgcaaggtcatcacgac
agtgcttcttctctcacatcccccgagatgacgttgtctgtggagcctgtgatgctcaca
aaagcacctcgggatcttaatcaggaagaacctcagccatccacctccacttccgacctc
tgttttcagctaccttttacacctggacccccgtcagccagagcgtgtctaaactctgca
ggcacgcaatccagagatgtatcggaaggacctgagaaatcaccaaacattttggagcca
caatgcaagaagcgaaaaactgagaccccactttcatccagcacagagctaacgccacca
accttgccatcaaccagaaatcttttggtcccagcgcaagcagaagagaccaagacagac
aagatggaggaatcactgacttgtattatttgccaggacctcctctatgactgtgtcagc
ttgcaaccatgcatgcacacgttctgtgctgcctgctactctggctggatggagagatca
tctctttgtcctacatgccgctgccccgtggaaaggatccgtaagaaccatatcttcaac
aacctggtggaggcctacctcaaccaacaccctgaaaagtgtcgtagtgaggaggacatg
aagagcatggacagccgcaacaaaataactcaggacatattgcagccaaaggttgagcgt
tgtttctctgatgaggatggaagctctgattacctttttgagctctctgacaatgacagt
gactcctctgacatgagtctgcctccattgctctgcagacagtgtccaggttacaggaaa
gacgtcaatgagatgctgtttggcaactttgccacaggctcaaactgctgggttccgtgt
ctaccagtcccacctcctatgcctccttctctttcacatccaatcaaagcagctgcagat
gaaagctctgtgaagtccattgggttggagccctcaacgtcttctgacaacccatcagct
cctcaagactactgctgtcaacctcttggctgccacctcatttgtacctgctgcctacaa
cctatgccagacagacgggctgaaatgaacagccagcaatattgtgtgcagtgccagcgt
cctttttgtcatatttattggggttgcaagaggattggctgtcagggctgccttgctcga
ttcagtgagctcaatctgaccgatagatgtctggagggtgtactgaacaacaataactac
gaatcagagatcctcaagaactatttgtcttcaagaggcaagacatggagggatctactc
aaggaagccttcaacgacttgcaacaggggaaatattgcctttcaaatcaccacatatct
gcaaatccgatcctttgtatatgctgcggcttggtggtgttcaaggagatggcgtacaag
tatagacagaatattcctccagctgaactaccagctgctgtattggctcgtcctgactgc
tactggggacgtaactgtcgtacacaagtgaaagcccatcatgcaatgaaattcaaccac
atatgtgagcagacccgcttcaagagttga
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