Syngnathoides biaculeatus (alligator pipefish): 133499386
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Entry
133499386 CDS
T09681
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133499386 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133499386 (skic3)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
133499386 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_11
TPR_16
TPR_14
TPR_17
TPR_CcmH_CycH
TPR_12
TPR_8
TPR_9
ANAPC3
TPR_7
ARM_TT21_C
TPR_NPHP3
TPR_15
SNAP
COG4_N
Motif
Other DBs
NCBI-GeneID:
133499386
NCBI-ProteinID:
XP_061673335
LinkDB
All DBs
Position
4:complement(29557732..29574937)
Genome browser
AA seq
1566 aa
AA seq
DB search
MSSKEVKAALKSAREAIKSKEFKEALKHCKTVLKLEKNNYNAWVFIGLAASELEQPDQAQ
TAYRKAVELEPEQLLAWQGLGNLYEKTDQWDFKIELPNVYQKLVQLYASSDKIKCYEVIG
KLQDIYQSDKDYSKLAQVWLQMIELKQGDGADKKALLQLWQQMAQLLSTCLSDNEQDIET
QKHLSTALEKAMVLVEPTPGEEHQKLSADYIKCLSKLPEEEEKMKQACESMVSLYPAQSY
PLEVLCFHYLKKGVQNEETVNCFSRLHNLAPDNSLCNLGFGTKALQEGRYKDAIKDLDQG
LKKRNFSPAWYSLAEAQLKLHKYSDCSKSCAQGLTVCVPGDKELRIRLLKLKLEALVRSG
EDKAPEQALETYSLIPNADNDPLLVVLKGRAYLNKGNVVESLKVSSQLLASNPNLAQASA
LRGLVHLAEDQKQLAEQSFLKASAQSPDCGEYFFFLGQLYWTMGEETRKDRSKAHSHFLK
AAKLDPHLGSVFRYLGHYYQEVANDSGRARGCYKKAFDLDSDDAESGAAAVDLSMSHEDM
DTALAILQSVIEKATPGSAKWAWMRRGLYYLKVGQHQQAIADLQAALRADPEDWVCWECL
GEAYLNRQSFTAALKAFGKAHILQPTSIYSVYQAAAIKQTLGKFQEAVTEYLQITAQHDY
VPALKGLGECQLSLAKSLMEDCRDGRAIDLIKQAIQNLFKAVQLRSDLSCLWKLLGDACS
AIGTVSSKRAQIHMPAALAGLDPQIQVHLLNQVQTLRVGERCYTRALKLMPEVASLWYDL
GLNFYDQARLTCDAEQEQSLLVEKAQQCLRKAVMMDSGNHSCWNTLGVINTSKGLENLAL
AQHCFIKSIQVEPNNVVAWTNLGTLYLKKDNIELAHEAFKVAQSLEPMYVNCWIGQALIA
ERVGSYDTMDLFRHTTELSTHTEGVKGYAHWVCSTLLDKSKRDTEQYRYNIVQMNAISAA
QVALSKYTERIQSEADAFIMLGFLTEHLHLIRQAVQAYQRAVELLESTSLTEHLSFARSN
YARTLCASGRWEEAIHIYNSSALEDLSDLSGLALAYCKAGLIPESISTYERALAVASSEK
ETAYVLTSLSLLKHQEGNVDSAKTLLFKCSMLKEPVPESLLCLCALGLVHNDITLAVAAR
TELLKQGSACVTVIEQRCLLTCTLLALQGNYSAVQREASRAVHSYPGNSSLWSLLSRLVP
QYYPRKANGGAMAGHVACLSSMTQGKRALLYSGLNQLACGRHSGEDAQRNALKTMQRAVR
LCPDDPAAWAGLMAACHTENTSCYLSSSAPRRQGLEQTLMSVVSEKVRSVEEIERPLAQS
LEGWVLQQAVSGLMLSGQLQQAEALCSQVLNVSPEHPAVMLSLRQVQCQRLLEAGDGTFL
SESTLEQLHSAVMLNPTNVAAWHWLAGVYISQGLLVQAVMALRQSLQLASQLGIHSCQVA
SLLRLGLLALRSCMAGVPGNDWKDLVHQATTEALKLDSSPVARLIQALLQFVTKMAARET
RRLLEKLVYVPCQEFPVTVAQVASWYLLRHLHSKNDEELIHALLEHARMNGDRRLLDFHS
QLVSSS
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtaaagaagtgaaagccgccctgaaaagtgctagagaggctataaaaagcaag
gaattcaaagaagcgttgaaacattgcaagactgttctgaagctagaaaaaaacaactac
aatgcatgggtgttcattgggcttgctgccagtgagttggagcaacctgatcaggcacag
acggcctacaggaaggctgtggagctggagcccgaacagctactggcatggcagggcctg
ggcaatttatatgagaagacagaccagtgggatttcaaaattgagctacctaacgtctat
cagaagcttgtccagttgtatgcaagctcggacaaaatcaagtgttacgaggtgatcgga
aagctgcaagacatatatcagtctgacaaagactattccaagttggcacaggtttggctg
cagatgattgaactgaaacagggcgacggcgcagacaagaaagccttactgcagctatgg
caacagatggcccagctcctgtcaacctgcctcagtgacaatgagcaggacattgaaacc
caaaagcatctaagcacagcgttggagaaggcaatggttcttgttgagccgacacctgga
gaagagcaccagaagctctcggccgactacatcaaatgtctttctaagttacctgaagaa
gaagagaagatgaaacaagcatgcgagtcgatggtttcactctaccccgcccaaagttat
cctcttgaagtcctttgttttcactaccttaaaaaaggtgtccagaatgaggagactgtc
aattgtttttcacggcttcataatttagcgccggacaacagtttgtgtaacttgggattt
ggcacaaaagcactccaagagggccggtataaagatgccattaaggatctggatcaagga
ttgaagaaaaggaatttcagtccagcgtggtacagtttggcagaggctcagcttaaattg
cacaaatactcagactgctctaaatcatgtgcccaaggtttgacagtgtgtgtccctggt
gacaaggaactgaggatcagactgctaaagctaaagcttgaagctttggttaggagtgga
gaggataaggctccagagcaggctttggagacatattccctgatccctaatgctgacaat
gacccattactggtagtccttaaaggtcgtgcatacctcaataaaggaaatgtagttgag
tcgctaaaggtgtcctcacagctgttggcctcaaacccaaacctggctcaggcgtcagcg
ctgaggggactggtccacttagctgaggaccagaaacagctagcagaacaaagtttcctc
aaggcatcagcacaaagccctgactgtggagaatattttttctttctgggccaactttac
tggaccatgggagaagagacccgtaaagacagaagcaaagcacattcacattttctcaag
gctgcaaagttggacccacaccttggtagtgtgttccgctacctcggacattattaccag
gaggtggccaatgactcaggtcgggcacgtggttgctacaagaaggcttttgacttggat
agtgatgatgccgaatccggcgcggctgcagttgatctcagcatgtcacatgaagatatg
gacactgctttggcaatacttcagtcagtgatcgagaaggccactccaggttctgctaaa
tgggcctggatgagacgaggtctttactacctaaaggtcgggcaacatcaacaggcgatt
gcagatctccaggcagctctaagagcagatccagaggactgggtctgttgggagtgttta
ggtgaggcttacctaaaccgccagagtttcacagcagctttgaaggccttcgggaaggcc
cacattcttcagccaacctccatctacagcgtctaccaggccgctgcgatcaaacagacc
ctcggcaagttccaagaggctgtcactgagtatttacagatcacagcacagcatgactat
gtccctgctctgaaaggtcttggtgagtgtcagctttccctggcaaaaagtttaatggag
gattgcagagatggtagagccatagacctaattaagcaagctatacagaaccttttcaag
gctgtgcagctgcgatctgacctgtcctgtttatggaagcttctgggagatgcctgctct
gctatcggcacagtgtcttcaaagagagctcagattcacatgccagcagccctagctggt
ttggacccacaaatccaagtccacttactgaaccaggttcagactctcagagttggagag
aggtgttacacacgtgcactgaagctcatgccagaggtcgccagcctttggtatgacctg
ggactcaacttttatgatcaggctcgcctgacttgtgatgctgagcaggagcaatcatta
ctagtagagaaagcacaacaatgtttaagaaaagcagtcatgatggacagtggcaaccat
agctgctggaatacactgggagtgatcaatacaagcaaaggtctagagaacttggccctg
gctcagcattgcttcataaagtccattcaagttgaaccaaataatgttgttgcctggacc
aacctgggcaccttgtatctgaaaaaggacaacatagagcttgcacatgaggcctttaag
gttgcacagtcattggagccgatgtatgtcaactgctggattggacaggcactgatagca
gagagagtcggaagctatgacaccatggatcttttcagacacaccactgaactcagcaca
catacagagggggtgaagggctacgcacactgggtctgttccaccttgttggataaaagc
aagagagacaccgaacagtaccgctacaacatagtccagatgaatgccatctctgcagcc
caggtggcactcagcaagtacaccgaaaggatccaatcggaagctgatgcgttcattatg
ctgggcttcctgacggaacatctgcatctgattagacaggctgtacaggcttatcagaga
gctgttgagctgcttgagtccacatccctcacagaacacttgtcttttgctcggagtaac
tatgctcgtacattatgtgccagtgggcggtgggaggaggcaatccatatttataactcc
agtgccctggaggatctcagtgatctatcaggactggctctggcctactgcaaggcaggg
cttataccagagagcatcagcacatatgagcgtgccctggctgtggcctcgagcgaaaag
gagacagcatatgtcttgacatctctatccctgctaaagcaccaggagggcaatgtagac
tctgcaaagaccctgctgttcaaatgctccatgttgaaggaaccagtaccagaatctctt
ctgtgtttatgtgcccttggattggtccacaatgatataacgctagctgttgctgcccgc
acagagctgctcaaacaaggctcggcctgtgtgactgttattgagcagcgatgtcttctc
acctgcaccttattggcgcttcaggggaattacagtgcagtgcaaagggaggcctccaga
gctgtacacagttatccggggaactcatctttgtggtcactcctgtccagacttgtaccc
cagtactaccccaggaaggcaaatgggggagccatggccggacatgttgcctgcctctct
agtatgactcagggaaagagagcattgctgtacagtggactgaaccagctggcctgtggg
agacactctggagaggatgctcaaagaaatgctctgaagaccatgcagagagctgtgcgg
ctctgtcctgatgatccagctgcatgggcaggattaatggctgcctgtcacacagaaaac
acttcctgttatctctcgagctcagcccctcgtaggcaaggactagagcaaaccctcatg
tcagtggtttctgagaaagtccgtagtgttgaggagatagagcggccgctagcccagtct
ctggaaggatgggtactacaacaagcagtgagtggtcttatgctgagtggccaacttcag
caggcagaagcactctgctcccaggttctgaatgtgtctccagagcatcccgccgtgatg
ttgtcgctcagacaagtacagtgtcagcgcctcctcgaggcgggtgatggtactttcctt
tcagaatctaccctggagcagctccacagtgctgtgatgttgaaccccacaaatgtcgca
gcctggcactggttagccggggtgtacatcagccagggtctgctcgtgcaggcagtcatg
gcgctcagacagagtttgcaactcgcctcccagctcggcatccacagctgtcaagtagcc
agcctactgcgactcggtctacttgcactaaggtcctgtatggcaggggtccctggaaac
gactggaaagatctggtccatcaagctacgacggaggccttgaagctggactcctcccct
gtggctcgcctcatccaggccctgctccagtttgttaccaagatggctgccagggaaacc
aggcgactgttggaaaagctggtctatgtcccctgtcaagaattccctgtgactgtggca
caagtggccagctggtatctgctaaggcacttgcattccaagaatgacgaggaactgatt
catgcacttttggagcacgccaggatgaatggggaccgacgactgctggacttccattct
cagcttgtttcttcctcctga
DBGET
integrated database retrieval system
