Syngnathoides biaculeatus (alligator pipefish): 133499606
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Entry
133499606 CDS
T09681
Symbol
tmc1
Name
(RefSeq) transmembrane channel-like protein 1 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sbia02000
]
133499606 (tmc1)
03037 Cilium and associated proteins [BR:
sbia03037
]
133499606 (tmc1)
Transporters [BR:
sbia02000
]
Other transporters
Pores ion channels [TC:
1
]
133499606 (tmc1)
Cilium and associated proteins [BR:
sbia03037
]
Other cilia and associated proteins
Stereociliary proteins
133499606 (tmc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
COX16
Motif
Other DBs
NCBI-GeneID:
133499606
NCBI-ProteinID:
XP_061673791
LinkDB
All DBs
Position
4:complement(3006708..3033374)
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AA seq
977 aa
AA seq
DB search
MEHTNVGVGNLSRHRQLSPLLDQPKNYKERGRAVRPGRVPSGARTSFPTSTAHIGLDTST
GDEGHIYTISGDDQGTKMEKKKRGAQRERKKGNGKKKKHIGETAEELVGTTERDEQEKSR
GKSDENESTKEIEEENKEKRARKKKKIREKMEEVKEDEDENVKRKKKQESTQKEERKDNI
CKREEKMEGDVAMMKKRKKTCETSSERETSEADGNEEEDSDEEALSLTAEELQELKEQVD
DRKALIQNLRGKPWAMKNKIFALRESQEFVENYQGALGRGKGRRFYAYKLVMNKKWMKFQ
RDFENFKSACIPWEMKIKEIESHFGSSVASYFIFLRWMYGVNMISFGLTFGLVMVPEALM
GQPYGSITRKTVPRSEEGRAMDFAVLWDFGGYAQYSVLFYGYYNDQRAIGWLKFRMPLSY
FLVGVGTVAYSYMVVIRTMARNSNETGVGNDNSFHFSWKMFTSWDYLIGNSETADNKFAS
ITTSFKEAILDEQASCKDDNVHLTRFLRVLANFLVLCCLAGSGYLIYFVVRRSQKFALDG
MENHSWWERNEVNVVMSLLGMFCPMLFDIISTLENYHPRVALQWQLGRIFALFLGNLYTF
IIALMDEINLKREEEQIVKLNITRWETSFSNGTQSENGTAVDPADVPRGPCWETMVGQEF
VRLIISDTMTTYATLLIGDFLRAMLVRFLNYCWCWDLEAGFPSYSEFDVSGNVLGLIFNQ
GMIWMGAFYAPCLPALNLLRLHVSMYLQCWAVMCCDVPQERVFKASRSNNFYMAMLLVIL
FLSTLPAMYTIVTIPPSFDCGPFSGKSRMFDVIHEMLELDFPAWFGKVFSYASNPGLVLP
FMLLMVLAIYYLQSTSKSHKEANVELKKKLQTQTEYNKQKNKQSALKAAADLEEATKDAE
ILKKTGNGKEKHKRCQKSHRGKNGPNSAASRGQVRPGRRTPAFGGHRHGNTEPSPHLPGF
TQQSHQKIDTVPRLQRR
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggagcacacaaatgtgggcgtcggtaacctatccagacatcgtcaactatctcctctt
ctggaccaaccaaagaattacaaagagagagggagagcggttcgaccgggacgagtccca
agtggagcccgcacctctttcccgacttccacggcacacattggcctggatacaagtacc
ggtgatgaaggtcatatttacacaatatcaggggatgatcaggggacaaaaatggaaaaa
aagaagcggggtgctcaaagagagagaaagaagggaaatggaaagaagaaaaaacacata
ggagagactgcagaggagttggtggggacaacagagagggatgaacaggaaaagagcaga
ggaaagagtgatgaaaatgaaagcacgaaggagatcgaggaggaaaacaaagaaaagaga
gcaaggaagaagaagaaaataagagaaaagatggaggaagtgaaagaggatgaggatgaa
aacgtcaagaggaaaaagaaacaggaaagtacccaaaaagaagagagaaaagacaacatt
tgtaaacgggaggagaagatggaaggagatgtcgcaatgatgaaaaagcgcaagaaaacc
tgtgaaaccagttcagagcgggaaaccagtgaggcagacggcaacgaggaagaggacagc
gatgaggaagcgttgagtctgacagcggaggagctgcaggagctcaaagagcaagtggac
gacaggaaggcgctgatccaaaatctccgcgggaagccgtgggcaatgaaaaacaagatc
ttcgctttacgggagtctcaggagttcgtcgagaactatcagggggcgttgggcaggggc
aaaggtcgcaggttctacgcatacaaactcgtgatgaacaagaaatggatgaagtttcaa
cgtgactttgaaaacttcaaaagtgcctgcatcccatgggagatgaaaatcaaagagatt
gaaagtcactttggctcttctgttgcgtcctacttcatcttcctgaggtggatgtacggc
gtcaacatgatctccttcggcttgacctttggcctggtcatggtgccggaggcgctaatg
gggcagccctacggcagcatcaccagaaagacggtcccgaggtctgaggaagggcgcgcc
atggactttgctgtcttgtgggactttgggggttacgcgcagtactccgtcctcttctat
ggatactacaatgaccagcgcgctattggctggctcaagtttcgtatgcctctgtcttac
ttcctggtcggcgtaggaacggtggcctacagctacatggtggtcattagaacgatggcc
cgtaattcaaacgagaccggggtgggaaacgacaacagctttcatttcagctggaaaatg
ttcacaagttgggactacctgatagggaactccgaaactgcggataataagttcgcctcc
atcaccaccagctttaaggaagccatcttggacgagcaagcgagctgtaaggacgataac
gtccatctgacccgcttcctgcgcgtgctggccaatttcctggtcttgtgctgcctagcc
ggaagtgggtacctcatttattttgtcgtgcggcgctcccaaaagtttgccctggatgga
atggaaaaccattcctggtgggaaaggaatgaggtaaatgtggtcatgtccttactgggc
atgttttgccccatgctgtttgacatcattagcaccctggagaactaccaccctcgagtc
gccctgcagtggcagctggggcgcatcttcgctctcttcttgggaaacctctacaccttc
atcattgccctcatggacgagatcaacctcaaacgcgaagaggaacaaatagtcaagttg
aatatcacacggtgggaaacaagtttttccaacggcacgcaatcagaaaatggcactgcc
gttgatcctgccgacgtgccccgggggccctgctgggagaccatggtgggccaggagttt
gtgcgcctcatcatctctgacaccatgacaacctacgccactctgcttatcggtgatttt
ctgagggccatgctggttcgtttcctcaactactgctggtgctgggacctggaggctgga
tttccgtcatactctgagtttgatgtcagtgggaatgttcttgggttgatcttcaatcaa
ggaatgatatggatgggggccttctacgctccttgcctgcccgccctgaacctcctgcga
ctgcacgtgtccatgtacctccagtgctgggccgtcatgtgctgcgacgtgccgcaggaa
cgggtcttcaaggcctctcgctccaacaacttctacatggccatgctgctggtcatcctc
ttcctgtctacgctgcccgcaatgtacaccattgtcaccatcccgccgtctttcgattgc
ggaccgttcagcgggaagagtcggatgtttgatgtcatccacgagatgctcgagttagac
ttcccggcctggtttggaaaggtgttcagctacgcgtcaaatccgggactggtgcttccc
ttcatgttgttgatggtgctggccatttattacctgcaatccacatccaaaagccacaaa
gaagcaaatgttgaactgaagaaaaaactccagacgcaaactgaatacaacaaacaaaag
aacaagcaatctgcgttgaaggccgcagcggatttggaagaggccacgaaagatgcagaa
atactgaagaagaccggaaatgggaaagaaaagcacaagagatgtcagaaatcacatcgc
ggcaagaatggccccaattctgctgcctccagaggccaagtacgtccggggagaagaacc
ccggcattcgggggtcatcgccatggcaacactgagccttctccacacctgcctggtttc
acacagcaaagtcatcagaagatcgacacggtgccaaggctgcagagacgctga
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