Syngnathoides biaculeatus (alligator pipefish): 133499674
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Entry
133499674 CDS
T09681
Symbol
skic2
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133499674 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133499674 (skic2)
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133499674 (skic2)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133499674 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
133499674 (skic2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4-like_stalk
DUF3516
HTH_23
Hemocyanin_M
NirdL-like_HTH
Motif
Other DBs
NCBI-GeneID:
133499674
NCBI-ProteinID:
XP_061673942
LinkDB
All DBs
Position
1:1442198..1465237
Genome browser
AA seq
1255 aa
AA seq
DB search
MRQLSTIDRKMDRMNVPPSGPLDLPLSLLEMGCSGRFELITHTSPGSPFPPQSTLPNGLP
PTSLSLEAEVKKQFLQDPAWLPLHDTDFAFQKFLKVTQRNVNIDSLINCAGSPLHSGLSV
VRDPTTGMLLDFTEVSLENTDLSSKNSLSLQRKPGPPSESLRGSNTNYPFLPGGMEELTL
DQIKNKSKLQQDIDFENDLLRVPPGFKAGMDFSDKDIRVAKPEVNLMSLLSTLDDVTDLG
GDTEGKDEVQGQNDSAILPRTNSLEELGIKDAVPSSRFSKGKDRNSKQSEKAEETKKWAI
PIDISSPCDDFYKRIPHPAFKWPFEPDPFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYA
IALSQKHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPESSCLIMTTEILRS
MLYNGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSE
WIGRIKKKHIYVISTLKRPVPLEHYLYTGNSTKTQKEMFLLMDAAGNFLTKGYYAAVDAK
KERTSKYAQSFGTKNTTHNTTASQDRAVWLTLLHFLSNRQQTPVVAFTFSRTRCDENARS
LDSMDLTTSIEKAEIHSFFQKSLSRLRGGDRQLPQIVLMRDLLKRGIAVHHSGILPILKE
VIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAG
RRGLDATGTVIILCKAGVHEMSDLHVMMLGKPTTLHSQFRLTYTMILNLLRVEALHVTDM
MRRSFSESHRDTQAYEKRITQLKETLSTLPVLANDGQLSDLLPYYHTVTELQTTRNIIQR
AILESVNGLKALSVGRVVVVNNQQHLNALGVILQVSSDSVNRNFTALIICDKGNEEGEGN
SGDSRAFPHLHNIMLFIPEGPCSHTVQKLKPQDITGITVKTLKVIPDRIIDNYHKRQQPR
FRTEPPGQAISTATQELLRLAEANPGGIATLDPVNDLQLKSVDVVEASMHLRMLEDSLRG
FNCIHSPTFAEQFAKVKERMSVQEEMDKLVFLVSDQSLSLLPEYHQRIKVLQSLQYVDSS
GAVQLKGRVACQVSSHELLLTELLFENALSPLAPEESAALLSCLVFTQNTQVEPHITSTL
REGIDRVLSVAQRIGELQRECGLPQTAEEFVGQLKFGLTEVVYCWARGMPFAEIAQLTDV
QEGTVVRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgcgacaactcagcactattgataggaaaatggacagaatgaacgtgcccccttcgggc
cctttggaccttcctctgtccctgctggagatgggatgctctggcaggtttgagctcatc
acacatacttcgccgggttcccctttccctccacagagtacgctccctaatgggcttcct
ccaaccagtctgagcctggaggctgaagtaaagaaacagtttttacaggatcctgcctgg
cttcctttgcacgacacagactttgcctttcagaaatttctcaaagtgacacagagaaac
gtgaatatcgactctctgatcaactgcgctggatctccactgcattctggtctttctgtc
gtcagagatcctacaacagggatgctgctagattttacagaggtttcattggagaacact
gacctttcgtcaaagaactcgctgtcgttacaacgcaaaccgggacctccttctgagagc
cttagaggaagcaacacaaactacccgttcctacctggaggtatggaggaacttactctg
gaccaaatcaagaataagtcgaagcttcaacaggacatagactttgagaacgatttgctc
cgagttcctcctggttttaaagctggaatggacttcagtgacaaagacatcagagttgcg
aaaccagaggtcaatctcatgtcgctgctgtcaacattggatgatgtcaccgacttgggg
ggtgacacagaaggaaaagacgaagtccaaggacaaaacgattccgccatactcccaagg
acaaacagccttgaagagctgggcatcaaggatgcagtgccatcctctcgcttcagcaag
ggaaaagatagaaactcaaagcagagtgaaaaggcagaagaaacaaagaaatgggcaatt
cctattgacataagttcaccctgtgatgatttctacaaacgcattcctcatccagctttt
aagtggccatttgagcccgatccgttccagaaacaagccatattacgactagaggcgcat
gactctgtgtttgtagcggcacacacgtcagctgggaaaacggtagtggctgaatacgct
atcgccctctcacagaagcatatgacgaggaccatctacacctccccaatcaaggccttg
tccaatcagaagttcagagacttcaaaaccacttttggggatgttggtcttctcacaggt
gacgtccagctcagtcctgagtcttcatgtcttatcatgaccactgagatcctcaggtca
atgctttacaatggttcagaggtaatcagagacttggagtgggtcatatttgacgaggtc
cactatattaatgacgcagagagaggggtggtgtgggaagaggttctcatcatgttgcct
gatcacgtaagcatcattctcctgagtgccaccgtaccaaatgctctagagttcagcgag
tggatcggacgtattaagaagaagcacatctatgtaatcagcacattgaagaggcctgtg
cctttggagcattatttgtacactggaaacagtacaaagacccagaaagagatgttcttg
cttatggatgctgcggggaacttccttaccaaagggtactacgcagctgtagatgcaaag
aaagaacgtaccagcaaatatgcccaatcttttggaacaaaaaatacaacccacaacacc
acagctagtcaggaccgagcggtgtggctcaccctattgcacttcctgtccaaccggcag
cagacccctgtggttgcattcaccttctcccgcacccgctgtgatgagaacgcccgttca
ctagactctatggacctgacaacttccattgagaaggccgagatccactcattcttccaa
aaaagcctgagtcgtctcagaggaggagacagacagctgcctcagattgtgctgatgcgt
gatttgttgaagagaggcatagcagtccatcatagtggaatcttgcccatactgaaggag
gtcattgagatgctcttctcaagaggtctcgtaaaagtgctctttgcgaccgaaactttt
gcaatgggggtaaacatgcctgccaggactgtggtgtttgacagcatccgtaaacatgac
ggaaccggctttaggaatctactgcctggtgaatatattcagatggccggcagagctggt
agaagaggtcttgatgctacaggcactgtcatcattctttgcaaagccggtgttcacgag
atgtctgatctgcatgtcatgatgctgggtaagcccaccacccttcactcacagttcaga
ctgacttacaccatgatcctcaacctgctgcgagttgaggctctacatgtaacagacatg
atgaggagaagcttctctgaaagccacagagacactcaggcatatgaaaagaggatcact
caacttaaggagacattgtccactctgcctgttttggccaatgatggccaactctcggat
ttgttgccatactaccacaccgtgacagagcttcagaccacaagaaacatcatacagcgt
gctattctagagtcagtcaacggactgaaagctctgtctgtaggccgagttgtggtggtg
aacaaccaacagcatctcaatgccctgggagttatactacaggtgtccagtgattctgtg
aatcgcaactttacggcactcatcatatgtgacaaaggcaacgaggaaggagaaggaaat
agtggcgacagccgagcttttcctcacctccacaacattatgctcttcatccctgaaggc
ccatgcagccacacagtgcagaagttaaagccacaggatatcactggcatcacagtaaag
accctcaaagtaattcctgacaggattatagataactatcataagagacaacagccccga
ttcaggactgaaccacccggccaagcaatctccacagccacccaagagctccttcggttg
gccgaagctaacccaggtggcatcgccaccctcgacccagtcaatgacctccagctgaag
agtgtcgacgtggtcgaggcctccatgcatctccgcatgctggaggacagcctgagagga
ttcaactgcattcactcgccaactttcgcagagcagtttgcaaaagtgaaggagaggatg
agtgtacaggaagagatggataaactggttttcctggtctcggatcagtcattgtctctg
ctgcctgagtaccatcagaggatcaaggtactgcagtcgctacagtacgtagacagcagc
ggagccgttcagctcaaaggccgcgtggcctgtcaggtcagcagccatgagctcctgctc
accgagctgctgtttgagaacgcactgagcccgctggcgcccgaggagagcgccgctctg
ctgtcgtgtttggttttcacacagaacacgcaagtggagccgcacattaccagcacttta
cgggagggtattgatcgtgtgttgtcagtcgcccagcgtataggagagttgcaaagggaa
tgcgggttaccacagacagcagaagaatttgtgggccagttaaaatttggcctgactgag
gttgtatactgctgggctcgaggcatgccgtttgcggagatcgcccagctaacagatgtc
caggagggaacagtggtgcgctgcatccagcgtttggatgaagtactgaaggaggtgcgc
caggccgcccgcatcgtgggagactcggtgctagggagcaagatggagaaggcctccctc
gccatccggagggacatcgtctttaccgcctccctctacacccactga
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integrated database retrieval system
