KEGG   Syngnathoides biaculeatus (alligator pipefish): 133499936
Entry
133499936         CDS       T09681                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03420  Nucleotide excision repair
sbia04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    133499936 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    133499936 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sbia04121]
    133499936 (ercc8)
   03400 DNA repair and recombination proteins [BR:sbia03400]
    133499936 (ercc8)
Ubiquitin system [BR:sbia04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     133499936 (ercc8)
DNA repair and recombination proteins [BR:sbia03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      133499936 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 ANAPC4_WD40 Beta-prop_TEP1_C NBCH_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_RIG_1st Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_WDR35_TULP_N WD_LRWD1 Beta-prop_HPS5
Other DBs
NCBI-GeneID: 133499936
NCBI-ProteinID: XP_061674367
LinkDB
Position
4:complement(8713008..8729489)
AA seq 398 aa
MLGYLAARRAGLDDPLRLRRAEATRRVLSLQLNANRDMERIHANGVNTVDIEVIEGKYML
SGGADGVIVIYDLENFSGKPQYTCKAVSTIGRSSKYGHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFEGNVYSHHLSPIARKHSLIAVGTNNPKIQLCDLKSGSKIH
VLQGHRAEVLSVQWSPRYEHVLATASADSKVRVWDVRRASGCLFTLDQHNGDKSKAASEA
VNTAHNGRVNGLRFTSDGLYLLTSGTDDRMRLWNSATGENTLVNYGKVSNKSRKRRQFTV
SQGCSPEFVFAPCGSSVAVYGLHTGDLVTTLRGHYNQVDCCEFHPDHQELYSAGKDGNIL
AWVPVLRCPDVEDDSDEDATVKSSVIPAFQDAWSSDED
NT seq 1197 nt   +upstreamnt  +downstreamnt
atgctgggttatttggcagcaaggagggctggtctggatgaccctctccgactcaggcgg
gcggaggcgacgagaagagttctcagcctgcagttgaatgcaaacagagatatggagcga
atccatgcaaacggtgtcaatactgttgacattgaagtaatcgaaggcaaatacatgttg
tctggaggtgccgatggagtcatcgtcatctacgatctcgagaacttcagtgggaaaccg
cagtacacctgtaaagctgtctccaccattggcaggtccagcaagtacggccacaaattc
agcgtggagacagtccagtggtacccttacgacactggcatgtttgtatctagttccttt
gacaagacgatgaaggtgtgggacacggagactctcaagcccgctgaagtgtttgagttt
gagggcaacgtctacagtcaccacctgtcgcccattgccaggaagcacagtctcatcgca
gttggcaccaacaaccctaaaattcagctgtgtgacctgaagtccggttcaaagatccac
gtcctccagggtcacagagcggaggtcctgtccgtgcaatggtcacccagatatgaacac
gttctagccactgccagtgccgacagcaaagtgagagtctgggatgtgcgtcgggcatca
ggttgcctctttacgctggaccagcacaacggagacaagtcgaaagctgcttctgaggca
gtgaacacggcccacaacggcagagtgaacggcctgcgcttcaccagtgacggcctgtac
ctcctcacgtctgggaccgatgatcgcatgcgattgtggaacagcgccacgggggaaaac
accctggtgaactacgggaaggtcagcaacaagagccgaaagaggcgtcagttcacagtg
tcgcagggctgcagtccggagttcgttttcgcgccgtgcggcagctcggtggccgtttac
ggcctccacacgggcgacctggtcaccacgctgcggggtcactacaaccaggtggactgc
tgcgagttccacccggaccaccaggaattgtacagtgcaggtaaggatggtaacatcctg
gcctgggttccggtcctgcgttgcccagatgtggaggatgactcagatgaggacgccacg
gtcaagtcgtcagtgatcccagcctttcaagacgcgtggagcagcgatgaagactag

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