Syngnathoides biaculeatus (alligator pipefish): 133500113
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Entry
133500113 CDS
T09681
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03082
ATP-dependent chromatin remodeling
sbia03083
Polycomb repressive complex
sbia04110
Cell cycle
sbia04330
Notch signaling pathway
sbia04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133500113
03083 Polycomb repressive complex
133500113
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
133500113
04350 TGF-beta signaling pathway
133500113
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
133500113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sbia03036
]
133500113
Enzymes [BR:
sbia01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
133500113
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
133500113
HDAC complexes
Sin3A-HDAC complex
133500113
BRAF-HDAC complex
133500113
REST complex
133500113
SHIP complex
133500113
MiDAC complex
133500113
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
133500113
Heterochromatin formation proteins
Other heterochromatin formation proteins
133500113
Chromatin remodeling factors
NuRD complex
133500113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Glypican
Motif
Other DBs
NCBI-GeneID:
133500113
NCBI-ProteinID:
XP_061674638
LinkDB
All DBs
Position
1:complement(13593517..13598945)
Genome browser
AA seq
482 aa
AA seq
DB search
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
GEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPITAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLGG
GGYTIRNVARCWTYETAVALDCSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTDEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSADEDDEDPDKRVSIRAHDKRIACDEEF
SDSEDEAEGQGGGRRNATNHKKAKRMKKEEERDADEKKDVKDELKEEEKMDNLSAKEELK
NI
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgctctcgcaggggacaaagaagaaagtttgctattactacgacggcgacgtgggg
aactattattacggccagggccacccgatgaagccgcaccggatccggatgacccacaac
ctgctcctcaactatggcctctacaggaagatggagatctataggccgcacaaagccagc
ggcgaggagatgacaaagtaccacagcgacgactacatcaagttcctcaggtccatccgg
ccggacaacatgtcggaatacagcaagcagatgcaaagattcaacgtgggagaagactgc
ccagtgttcgacggcctgttcgagttctgccagctctccacgggcggctccgtggcgggc
gccgtgaagctgaacaagcaacagacggacatcgccgtcaactgggcgggggggctgcac
cacgccaagaagtccgaggcgtccggtttctgctacgtcaacgacatcgtgctcgccatc
ctcgagctgctcaagtaccaccagcgcgtgctgtacatcgatatcgacatccaccacggc
gacggcgtggaagaggcgttctacaccaccgaccgggtcatgacggtttccttccacaag
tacggcgagtacttcccgggcaccggagacttaagggacatcggcgccgggaaagggaag
tactacgcggtcaactacccgctgcgagacggcatcgacgacgagtcttacgaggccatc
ttcaaacccatcacggccaaggtgatggagatgtaccagccgagcgccgtggtcctgcag
tgcggcgccgactccctgtcgggggacagactgggctgcttcaacctcaccatcaaaggc
cacgccaagtgcgtggagtacatgaagagcttcaacctcccgctgctgatgctgggcggg
ggcggctacaccatccgcaacgtggcgcgctgctggacctacgagacggcggtggcgctg
gactgctccatccccaacgagctgccctacaacgactacttcgagtacttcgggcccgac
ttcaagctgcacatcagcccgtccaacatgaccaaccagaacacggacgagtacctggag
aagatcaagcagcggctattcgagaacttgcgcatgttgccgcacgcgcccggcgtccag
atgcaggccatacccgaagacgccccccaccccgacagcgcggatgaggacgacgaggac
ccggacaaacgcgtttccatccgcgcgcacgacaagaggatagcgtgcgacgaggagttc
tccgactccgaggatgaggccgaggggcaaggaggcggtcggcggaacgcgaccaatcac
aagaaggccaagcggatgaagaaagaggaggaacgtgacgcggacgaaaagaaagatgtg
aaggatgagctcaaggaggaagaaaagatggataatttatcagcaaaagaggagctgaag
aacatttga
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